Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6294
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    32   0.084
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   2.4  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    27   4.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.5  
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    26   5.5  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   5.5  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   5.5  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    26   7.3  
SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    26   7.3  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 32.3 bits (70), Expect = 0.084
 Identities = 30/128 (23%), Positives = 49/128 (38%)
 Frame = -1

Query: 773 PSTEATCRLTSSPSRTASSDNCGDWCTVLPSEISIAVFGHNIGSSSDVLCVFRFLFTLKG 594
           PS+ ++  LTSS   T+S  +     +   S +S +       SSS    +     +   
Sbjct: 222 PSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSS 281

Query: 593 QAAAPGLSLSECRSSALSPLVGPYFFETGSPSPLRYESGLMLAASSEEFEDKSDDRSSIF 414
              +   ++S   SS+ SP        + S S   + S L  ++ S      S   SS  
Sbjct: 282 SPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSS 341

Query: 413 TVSWLPSS 390
           T+S   SS
Sbjct: 342 TISSSSSS 349


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 547 AEDRHSDRDSPGAAACPLRVNKKRKTQSTSEEEPILCPKTAIEISEGSTV 696
           +E   SD  S   +       KKRK +  SEE P    K + + +E  TV
Sbjct: 216 SESGDSDSSSDSESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTV 265


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 628 STSEEEPILCPKTAIEISEGS 690
           ST EEE ++   T+++ISEG+
Sbjct: 2   STMEEEKVISKSTSVDISEGT 22


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 608 IKNEKRKAHRKKNQYYVRKRLSKFQKEVQ 694
           + N +++  R  NQ  +R + +KF+KEV+
Sbjct: 582 LPNPQKRQKRLSNQVELRNQWAKFEKEVE 610


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +1

Query: 610 KKRKTQSTSEEEPILCPKTAIEISEGSTVHQSPQLSDDAVLEGDEVNRQVASV 768
           K  + Q  S  E    PK A + S  ST     QLSD  ++ G+E    + SV
Sbjct: 229 KAFENQKGSAGETKSEPKEADKGSGDSTKSTMHQLSDSEIITGEEEEESIFSV 281


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -1

Query: 500 SPLRYESGLMLAASSEEFEDKSDDRSSIFTVSWLPSSR*KDSLLPRRDPMHTARRRRPDN 321
           S + Y   L +  S  E E+        F       SR +++LLPR +P+     R+P  
Sbjct: 47  SQIEYLQALQMQQSLSESENYLQPNFFPFQSGPFSKSRRENTLLPRLNPLAPIGARQP-- 104

Query: 320 IEQNPHVP 297
              NP +P
Sbjct: 105 ---NPSIP 109


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 503 PSPLRYESGLMLAASSEEFEDKSDDRSSIFTVSWLPSS 390
           PSP++  +   ++ + EE  D S   SS FT+S+ PS+
Sbjct: 513 PSPIKSRNNNQMSFAMEEEADVSQPSSSSFTLSF-PSA 549


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 612 KTKNAKHIGRRTNIMSENGYRNFRRK 689
           +T+N     RRT  + ENG+RN R+K
Sbjct: 94  RTRNRSQTQRRT--LLENGFRNSRKK 117


>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -1

Query: 671 IAVFGHNIGSSSDVLCVFRFLFTLKGQAAAPGLSLSECRSSALSPLVGPY 522
           +  +  N   S  + CV +F+ T+  + A     L    S   SP+V PY
Sbjct: 50  VGTYPFNSFLSGFISCVGQFVITVGFRMALTQQELQSSSSKKKSPVVSPY 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,426,012
Number of Sequences: 5004
Number of extensions: 73934
Number of successful extensions: 255
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)