Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6292
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    27   3.0  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    25   9.2  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -2

Query: 531 FRVS*IFT*RINSNSVNRLVTFFCNFME*HILNLGCSTATTYLLFVGLSTVITHTYFFQF 352
           F ++ +F  ++NS  +N+ +++   F+   +  LG  T  T+L F     VI    +F  
Sbjct: 149 FFLTILFLSKLNSVPLNKKISYLYTFLLAIVSVLGFFTRITFLAF-----VIAPYIYFSV 203

Query: 351 KCF 343
           +CF
Sbjct: 204 RCF 206


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/73 (21%), Positives = 31/73 (42%)
 Frame = -3

Query: 713 FILMNIILRI*FALPRPLIVYWVIYCDYTIIFLFNFYFHVYHIGLTDKLRFILIRLRGSP 534
           F+   +   + +  P P  + + I   Y  I     +  +++I  TDK + + I + G  
Sbjct: 109 FLYSLLFKNLDYIQPGPTFLIFAILYQYYYIVPSTVFVRLFNIKFTDKFQMV-IPMIGLA 167

Query: 533 LSVFLKYLLNALI 495
            S F    +NA +
Sbjct: 168 FSHFPSTFINAFL 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,136
Number of Sequences: 5004
Number of extensions: 60240
Number of successful extensions: 127
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)