Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6290
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    30   0.020
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.2  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 29.9 bits (64), Expect = 0.020
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 124 PFTVVPRVTGSIPTSDKHSCDEQICLLSVWV 216
           P+TV   + G+I     HSCD  + +  VW+
Sbjct: 563 PYTVDAAIYGNISHFINHSCDPNLAVYGVWI 593


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 559 LWRTSVKALINKDSNMAATALPRATNY 479
           +WR  +    N D N   T + +AT Y
Sbjct: 110 IWRPDIVLYNNADGNYEVTLMTKATVY 136


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -1

Query: 559 LWRTSVKALINKDSNMAATALPRATNY 479
           +WR  +    N D N   T   +AT Y
Sbjct: 110 IWRPDIVLYNNADGNFEVTLATKATIY 136


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 138 AEGHGFNSHIR 170
           A GHGF++H+R
Sbjct: 18  AGGHGFDAHLR 28


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 138 AEGHGFNSHIR 170
           A GHGF++H+R
Sbjct: 18  AGGHGFDAHLR 28


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
 Frame = -1

Query: 559 LWRTSVKALINKDSNMAATALPRAT-NY 479
           +WR  +    N D N   T   +AT NY
Sbjct: 106 IWRPDIVLYNNADGNFEVTLATKATLNY 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,660
Number of Sequences: 438
Number of extensions: 2968
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)