Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6289
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    26   3.7  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   3.7  
SPAPB2B4.07 |||ubiquitin family protein, human UBTD1 homolog|Sch...    26   4.9  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   4.9  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    25   6.4  
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    25   8.5  

>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -1

Query: 601 TSSSPAKVTNHLFEDRRIPFSGIDLIALNIQRARAHGVPGYNNY 470
           T+ SP+  T      R +    ID    N      HG PG+ +Y
Sbjct: 463 TTESPSNATKENSLSRNVQSPNIDTAISNRSTNVRHGHPGFKDY 506


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 281 TSAMPGAEPSRCLPLNTLHKPRLKKDMS*RSGNTVEGSSFHSRMVRG 141
           TS++P    S     NTL  P L  + S    +TV  + FH+  + G
Sbjct: 740 TSSVPTQHNSFDAMHNTLRSPSLNSNNSSAHASTVSRNPFHNLKISG 786


>SPAPB2B4.07 |||ubiquitin family protein, human UBTD1
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 456 LHRAL*LLYPGTPWALALWMLRAIKSIPENGIRR 557
           LH+ + LLY G   A     L A  +IPEN I +
Sbjct: 68  LHKVVTLLYEGNAEAATEMALAADLTIPENDISK 101


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -1

Query: 571 HLFEDRRIPFSGIDLIALNIQRARAHGVPGYNNYRALCNLKRATTFDDLAR 419
           HLF  R    + +  +       R H     N++R LC+LK+  +  D+ R
Sbjct: 766 HLFSGRNEDIASLQCVLQFGSSERIHLEDIQNSHRYLCSLKKNNSQKDIHR 816


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 57  TAHHRE*SSSVLPGATAVIHSAFPEIFFATYH 152
           TA  R  + ++L  + +VI  A  ++F+AT H
Sbjct: 601 TASSRRETVNILSSSISVIECAVNDVFYATVH 632


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 313 T*W*VVTVAHGLQQCQGQSQAAAYRLILST 224
           T W +V++ HGLQ C   +   A+ ++ +T
Sbjct: 201 TNWTLVSLNHGLQSCMDPNTINAHLVVSAT 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,998
Number of Sequences: 5004
Number of extensions: 62956
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)