Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6289
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0196 - 15374814-15374997,15375304-15375547,15376035-153762... 30 1.2
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 30 1.6
12_02_1146 + 26458426-26458680 29 2.1
02_05_0497 - 29502012-29502101,29502128-29502197,29502302-295024... 29 3.7
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 5.0
10_06_0140 + 11147019-11147791,11148301-11150524 28 6.5
10_08_0979 - 22000645-22000923,22000991-22001896 27 8.7
09_02_0315 - 7179332-7179949 27 8.7
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449... 27 8.7
>12_02_0196 -
15374814-15374997,15375304-15375547,15376035-15376237,
15377275-15377502,15377674-15377819,15378020-15378233,
15378410-15378543,15378986-15379135,15379892-15380155,
15380962-15381051
Length = 618
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 535 IDLIALNIQRARAHGVPGYNNYRALCNLKRATTFDDLARE 416
IDL AL + R R VP YN +R L +++DL +
Sbjct: 470 IDLAALEVYRDRERSVPRYNEFRRRLFLIPIKSWEDLTSD 509
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/53 (39%), Positives = 24/53 (45%)
Frame = +2
Query: 152 SGYGMSSPPRCSPSAMTCPSSNEACGEY*AVGSGLALPLALLKSMGNGNHSPS 310
+G G SP + SPS PS N GSG A P + S G GN PS
Sbjct: 79 NGKGYQSPYQPSPS----PSPNAPVSPSPVNGSGHASPKSPTPSCGKGNQPPS 127
>12_02_1146 + 26458426-26458680
Length = 84
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -2
Query: 255 KPLPTA*YSPQASFEEGHVIALGEHRGGELIP*PDGTWQKRSLETHCG*PQWLQV 91
K LP Y A+ E + LGE+ GG+ + +W S HC P WL++
Sbjct: 15 KALPKVVYGTAAAAESSCAVCLGEYGGGDEL--RVLSWCAHSFHRHCVDP-WLRL 66
>02_05_0497 -
29502012-29502101,29502128-29502197,29502302-29502411,
29502530-29502641,29503341-29503498,29503592-29503807,
29504127-29504354,29504722-29504801,29504886-29505056,
29505179-29505281,29505369-29505551,29506313-29506813,
29506935-29507100,29507517-29507566,29508047-29508127,
29508291-29508398,29508874-29508939,29509053-29509109,
29509442-29509507,29509917-29510006,29510850-29510975,
29511681-29511717,29512192-29512250,29512562-29512615,
29513294-29513428,29513542-29513612,29513720-29513957
Length = 1141
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = +3
Query: 369 TIELNQSHLAITSSGISLAKSSKVVALFKLHRAL*LLYPGTPWALALWMLRAIKSIPENG 548
T+ ++ S + ++ + + ++VV L +H + Y + ++RA K +PE
Sbjct: 674 TVAVSISDIMLSFAAYPIEIPAEVVFLHPVHNFALVAYDPSALGAGASVVRAAKLLPEPA 733
Query: 549 IRRSSNRWLV 578
+RR + +LV
Sbjct: 734 LRRGDSVYLV 743
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 116 QCVSRDLFCHVPSGYGMSSPPRCSPSAMTCPSSNEACG 229
QCV++D + SPPRC S+ P E G
Sbjct: 107 QCVAKDAAAQPEMSWPRGSPPRCPSSSCPEPQRQEFGG 144
>10_06_0140 + 11147019-11147791,11148301-11150524
Length = 998
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Frame = +2
Query: 59 RPPPGVEFIRTTWSH------CGHPQCVSRDLFCHVPSGYGMSS 172
RPPP +R+ W C CV R F H +G+G++S
Sbjct: 56 RPPPAAGDVRSAWIRGVRDLACDMEDCVDR--FVHRATGHGLAS 97
>10_08_0979 - 22000645-22000923,22000991-22001896
Length = 394
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 511 QRARAHGVPGYNNYRALCNLKRATTFDDLAREIPDEVIAR 392
+R A+ V Y +RA+C L R + D L+R + + R
Sbjct: 17 ERVLANDVADYIRFRAVCRLWRLRSVDPLSRALDCRFLPR 56
>09_02_0315 - 7179332-7179949
Length = 205
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 241 GRQRLGSAPGIAEVHGQR*PLTIRWAVCSSAYKGNKKKYARNVQLNST 384
GR G A +AEV + P + W +CS Y+GN Y N++L T
Sbjct: 80 GRVPRGGAR-VAEVLIEPGPERVAWVLCSWGYEGN---YLANLKLFDT 123
>03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,
4498179-4499263,4499351-4500296
Length = 1264
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 281 SMGNGNHSPSGGPYARLPTRAIKKNMLEMYN*TQPIS--PCDNLIRNFSSQVIEGSGS 448
S+ +GN SPS P PT A + +L + P S P NL+++ + + EG+ +
Sbjct: 1115 SVTSGNPSPSPSPSPTAPTNAWRSPLLSSPSPIAPRSRAPGSNLMKDKAVKRTEGAAT 1172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,543,793
Number of Sequences: 37544
Number of extensions: 513991
Number of successful extensions: 1279
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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