Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6288
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z82086-1|CAB04993.1|  738|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z49969-2|CAA90270.1|  564|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical p...    27   8.5  
U23514-11|AAM48531.1|  287|Caenorhabditis elegans Long protein 1...    27   8.5  
U23514-10|AAK95879.1|  301|Caenorhabditis elegans Long protein 1...    27   8.5  
U23514-9|AAC46538.1|  312|Caenorhabditis elegans Long protein 1,...    27   8.5  
AF016445-7|AAC69060.1|  249|Caenorhabditis elegans Pharyngeal gl...    27   8.5  

>Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical
           protein Y69H2.12 protein.
          Length = 528

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 104 CTDTTTGVIMILKMKTVAQAGCSSRNVFC 190
           CTD TT ++    + T  + GC+  N +C
Sbjct: 38  CTDVTTTLVSSTNVSTTYEYGCAPENCYC 66


>Z82086-1|CAB04993.1|  738|Caenorhabditis elegans Hypothetical
           protein ZK228.1 protein.
          Length = 738

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 414 WGISPPLVTNCLRRYSKEFITNLYGRQQLGSAPGIL 307
           W +SP +    LRRY+K+ I  LYG Q L +  G++
Sbjct: 456 WEVSPEVSAALLRRYAKDLI--LYG-QALKNEEGLI 488


>Z49969-2|CAA90270.1|  564|Caenorhabditis elegans Hypothetical
           protein W01C9.2 protein.
          Length = 564

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 377 DVIQKNSLPTFTVGSSWVLPLAFLNPMGECKHSP 276
           D I   +LPT TVG++   PL F   + E K++P
Sbjct: 201 DEIINTTLPTTTVGTTSRKPLLFTTVIQEVKNAP 234


>Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical
           protein C01G10.17 protein.
          Length = 75

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = +1

Query: 43  YQMFYWHRGGSGRQNSSFTCLH*YHHGRHNDFKNEDGCS 159
           Y  +Y++   +   N+ +T  + Y +  +N +   +GCS
Sbjct: 20  YYTYYYYPNNNYNNNNGYTTYYYYPNNNNNGYYYNNGCS 58


>U23514-11|AAM48531.1|  287|Caenorhabditis elegans Long protein 1,
           isoform c protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = -1

Query: 341 VGSSWVLPLAFLNPMGECKHS-PSDGNTRLPTRAIKKTTSVFSIRNTSGYFCKRH----S 177
           +  ++ +P  FL       HS P+D +  LP     K       R   GYF   H    S
Sbjct: 15  ISVAYNVPHGFLTGEAVTSHSGPNDLDGELPATDEVK-------REKRGYFFPSHFQSDS 67

Query: 176 GLSSRLEQPSSFLK 135
           GL SR E P+ +LK
Sbjct: 68  GLLSRSEHPNEYLK 81


>U23514-10|AAK95879.1|  301|Caenorhabditis elegans Long protein 1,
           isoform b protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = -1

Query: 341 VGSSWVLPLAFLNPMGECKHS-PSDGNTRLPTRAIKKTTSVFSIRNTSGYFCKRH----S 177
           +  ++ +P  FL       HS P+D +  LP     K       R   GYF   H    S
Sbjct: 15  ISVAYNVPHGFLTGEAVTSHSGPNDLDGELPATDEVK-------REKRGYFFPSHFQSDS 67

Query: 176 GLSSRLEQPSSFLK 135
           GL SR E P+ +LK
Sbjct: 68  GLLSRSEHPNEYLK 81


>U23514-9|AAC46538.1|  312|Caenorhabditis elegans Long protein 1,
           isoform a protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = -1

Query: 341 VGSSWVLPLAFLNPMGECKHS-PSDGNTRLPTRAIKKTTSVFSIRNTSGYFCKRH----S 177
           +  ++ +P  FL       HS P+D +  LP     K       R   GYF   H    S
Sbjct: 15  ISVAYNVPHGFLTGEAVTSHSGPNDLDGELPATDEVK-------REKRGYFFPSHFQSDS 67

Query: 176 GLSSRLEQPSSFLK 135
           GL SR E P+ +LK
Sbjct: 68  GLLSRSEHPNEYLK 81


>AF016445-7|AAC69060.1|  249|Caenorhabditis elegans Pharyngeal gland
           toxin-relatedprotein 5 protein.
          Length = 249

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 107 TDTTTGVIMILKMKTVAQAGCSSRNVFCKN 196
           T T T   ++L MKT A A C     FC N
Sbjct: 81  TATVTPAAVVLDMKTAALASCPKTCGFCCN 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,633,951
Number of Sequences: 27780
Number of extensions: 299675
Number of successful extensions: 597
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)