Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6287
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    27   1.2  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   2.1  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   2.1  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   3.6  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   4.8  
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ...    24   8.4  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    24   8.4  

>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 15  SKYFHNYFETITVPNDSAKDEHINY 89
           S+Y H +  T+ + ND   DE +N+
Sbjct: 789 SRYMHTFDTTLPMQNDEFTDESVNF 813


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 323 WNCKFVNYYDCILYFYNHKFPQGYTIKKKKKK 418
           W C   N   CI   Y H  P GY + + KKK
Sbjct: 156 WQCPNGNM-TCI---YKHALPYGYVLSRDKKK 183


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 12  NSKYFHNYFETITVPNDSAKD 74
           N KY  NYF T   PND+  +
Sbjct: 670 NMKYNSNYFPTTDAPNDAENE 690


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = -2

Query: 380 ICDYRSIKYNHNSLQTYNSN*L*SNFDYCGTSSFYINCHINSIQSRFCTVTGTSANVSQ 204
           +CD R+  + HNSL            ++C      I      + S+FC  T T  +V Q
Sbjct: 190 LCDLRTSYHKHNSLDALPL----PTPEFCQICEREIQSWFFELHSKFCLSTSTYESVVQ 244


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 287 SSFYINCHINSIQSRFCTVTGTSANVSQ*H 198
           SS  +NC ++SI S     T TSA  S  H
Sbjct: 167 SSLLLNCLVSSINSHRIEGTDTSAETSLLH 196


>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 268

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 222 RASNCTKSRLNRIYMTIYI--KTRGPAVVE 305
           +  N  + RLNR + T+YI  K  G AV++
Sbjct: 128 KTCNVPQRRLNRFFQTLYISMKRGGRAVMQ 157


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 1   LVRKTLNTFIIILKRLLCQMIL--RKTNISTIFMCLCINVVFNCCQ 132
           LV + L +  I +   +C  +L  R  +I      +C+  +++CCQ
Sbjct: 257 LVLRDLTSRFIDMIHDICDSVLFSRIHDIRASIRIVCVTALYDCCQ 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,602,183
Number of Sequences: 5004
Number of extensions: 30467
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)