Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6287
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908...    28   2.7  
05_03_0077 + 8200529-8200541,8200658-8200701,8200793-8200888,820...    28   3.5  
11_01_0755 - 6343084-6345172,6345526-6346367                           27   4.6  
02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468     27   8.1  

>09_04_0618 +
           18988614-18989102,18989913-18990314,18990555-18990806,
           18991564-18991941,18992350-18992426,18992700-18992808,
           18993424-18993574,18993810-18993903,18997072-18997474,
           18997590-18997742,18998115-18998474
          Length = 955

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -2

Query: 158 NSSENHDRDWQQLKTTFMHKHINIVDMFVFRRIIWHSNRFKIIMK 24
           +S+E  +  W Q+ + F H+H+N++++  F       N  ++IM+
Sbjct: 849 DSAEKVNLLWDQMSSDFKHRHLNLLEITGFAMDDKMINYTRLIME 893


>05_03_0077 +
           8200529-8200541,8200658-8200701,8200793-8200888,
           8201585-8201639,8201753-8201817,8202309-8202434,
           8202742-8202903
          Length = 186

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 3   RKENSKYFHNYFETITVPNDSAKDEHINYIYVLVHKCSF*LLPIPVVIFTR 155
           + E  + F N+F    VP+D AK++     +V        ++P  V  FTR
Sbjct: 106 KTEECESFFNFFSPPQVPDDDAKNDEYTLAHVARSTLRDKIIPHAVSWFTR 156


>11_01_0755 - 6343084-6345172,6345526-6346367
          Length = 976

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 60  DSAKDEHINYIYVLVH 107
           D  KD+H+ YIY L+H
Sbjct: 588 DDLKDDHVKYIYKLLH 603


>02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468
          Length = 666

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/62 (19%), Positives = 35/62 (56%)
 Frame = -2

Query: 284 SFYINCHINSIQSRFCTVTGTSANVSQ*HHYLTLSIMRVVSTNSSENHDRDWQQLKTTFM 105
           +FY++C  + ++S   TV+  S+++     ++++S++   +  S +  D+  ++   T +
Sbjct: 284 AFYVHCFAHQLESVLITVSRCSSSLIH-DFFVSISLIITTTIESCQMMDKSTEKHHQTTL 342

Query: 104 HK 99
           +K
Sbjct: 343 NK 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,871,180
Number of Sequences: 37544
Number of extensions: 149293
Number of successful extensions: 272
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)