Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6287
         (420 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   3.2  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   4.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.5  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    20   9.9  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    20   9.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    20   9.9  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 27  HNYFETITVPN 59
           H+Y  TITVPN
Sbjct: 129 HSYVHTITVPN 139


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 359 KYNHNSLQTYNSN 321
           KYN+N+   YN+N
Sbjct: 97  KYNYNNKYNYNNN 109


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 392 SLAEICDYRSIKYNHNSLQT--YNSN 321
           SL+  C+Y +  YN+N+ +   YN N
Sbjct: 306 SLSNSCNYSNNYYNNNNYKKLYYNIN 331


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 27  HNYFETITVPN 59
           H+Y  TIT PN
Sbjct: 97  HSYLHTITSPN 107


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 202 YCETFADVPVTV 237
           +CE   D PVTV
Sbjct: 828 HCEVHGDTPVTV 839


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 202 YCETFADVPVTV 237
           +CE   D PVTV
Sbjct: 824 HCEVHGDTPVTV 835


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = -2

Query: 146 NHDRDWQQLKTTFMHKH 96
           N D +WQ + T ++ ++
Sbjct: 104 NEDLNWQPIATKYLRRY 120


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = -2

Query: 146 NHDRDWQQLKTTFMHKH 96
           N D +WQ + T ++ ++
Sbjct: 119 NEDLNWQPIATKYLRRY 135


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 96  HKYS*YVRLSQNHLAQ*SFQNNYES 22
           +KYS Y   + N+    ++ NNY +
Sbjct: 322 YKYSNYNNYNNNYNNYNNYNNNYNN 346



 Score = 20.2 bits (40), Expect = 9.9
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -2

Query: 374 DYRSIKYNHNSLQTYNSN 321
           +Y +   N+N+   YN+N
Sbjct: 326 NYNNYNNNYNNYNNYNNN 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,934
Number of Sequences: 438
Number of extensions: 2054
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)