Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6286
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    28   1.8  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   9.4  
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    25   9.4  

>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 313 SN*LMIGRIVRPA--RIATTFLPRKDPSPSLNLKHLGTSKIRLRLRPHVSSGKQRLCGAP 486
           SN +    +V P+  + +   +PRK      N ++ GTS +  +L+P V     R    P
Sbjct: 309 SNYVKSSNVVNPSLSQASLEIIPRKSMKRDSNAQNDGTSTMTSKLKPSVGLSNTRDAPKP 368

Query: 487 G 489
           G
Sbjct: 369 G 369


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 632 TFYLVAFSSQLYNYLRNLIF*SSLQQFI*SHFL 730
           TFYL AF   L N+LR L + +S +    S FL
Sbjct: 446 TFYLTAFLCALLNFLRYLKYRNSKKDTELSLFL 478


>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 489 TFRRP*ATVTTHHQVGRMVK 548
           +F+ P  T+ THH VG ++K
Sbjct: 360 SFKGPSQTIKTHHNVGGLLK 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,207
Number of Sequences: 5004
Number of extensions: 55245
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)