Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6286
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879...    30   2.4  
09_04_0225 - 15855544-15855727,15855796-15856406                       28   7.4  

>03_05_0223 -
           22087076-22087340,22087448-22087726,22087808-22087950,
           22088029-22088133,22088272-22088465,22088561-22088753,
           22088893-22089202,22089335-22089558,22089862-22089990,
           22090019-22090078,22090426-22090617,22091463-22091522,
           22091606-22091688,22092473-22092611,22092949-22093083,
           22093187-22093462
          Length = 928

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
 Frame = -1

Query: 444 SKSQPYFR--CSKMF*IQTRTRIFPRQKCGSYPCWPHNTTYHQLITFMESILQVLKWLHV 271
           S   PYF   C++   I TRTR+    K     CWP   T   L+     I     + HV
Sbjct: 571 SGETPYFAAICARQRLIHTRTRLCEDIKVSGKSCWPSLKTL-LLLRLWSLIFPCSDFRHV 629

Query: 270 *IL**LRILCNY 235
                L ++C Y
Sbjct: 630 VATPMLLLMCEY 641


>09_04_0225 - 15855544-15855727,15855796-15856406
          Length = 264

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 506 SWTSESPGAPQSRCLPLET*GRSLNRILDVPRCFRFKLGLGSFRGRNVVAI 354
           +W +  PG  ++ C P  T GR  NR    PR +     +  FR  N +A+
Sbjct: 185 AWATSCPGTSRAGCPPTRTSGR--NRYNLKPRMYDINWDMDEFR-PNTIAV 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,846,195
Number of Sequences: 37544
Number of extensions: 358181
Number of successful extensions: 652
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)