Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6284
         (302 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80344-3|CAB02488.2|  491|Caenorhabditis elegans Hypothetical pr...    29   0.64 
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    28   1.1  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    28   1.1  
Z35601-1|CAA84667.2|  320|Caenorhabditis elegans Hypothetical pr...    27   2.0  
AB036738-1|BAB13470.1|  320|Caenorhabditis elegans neural RNA-bi...    27   2.0  
AL023810-4|CAD59138.1|  384|Caenorhabditis elegans Hypothetical ...    27   2.6  
AL008881-3|CAD59164.1|  384|Caenorhabditis elegans Hypothetical ...    27   2.6  
AL008881-1|CAA15517.2|  343|Caenorhabditis elegans Hypothetical ...    27   2.6  
Z66512-8|CAA91324.2|  349|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical pr...    26   4.5  
AL032646-2|CAA21677.1|  260|Caenorhabditis elegans Hypothetical ...    26   4.5  
AF326937-1|AAG49387.1|  260|Caenorhabditis elegans 2P40 protein.       26   4.5  
AL033512-3|CAA22077.1|  243|Caenorhabditis elegans Hypothetical ...    26   6.0  
AJ010708-1|CAA09308.1| 1158|Caenorhabditis elegans calcium ATPas...    26   6.0  
AF125446-4|AAD12806.2| 1158|Caenorhabditis elegans Hypothetical ...    26   6.0  
Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical p...    25   7.9  
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    25   7.9  
AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical ...    25   7.9  
AF192746-1|AAF08804.1|  401|Caenorhabditis elegans synapsin prot...    25   7.9  
AC006743-3|AAF60504.2|  401|Caenorhabditis elegans Synapsin prot...    25   7.9  
AC006743-2|AAM97971.1|  474|Caenorhabditis elegans Synapsin prot...    25   7.9  

>Z80344-3|CAB02488.2|  491|Caenorhabditis elegans Hypothetical
           protein F15D4.5 protein.
          Length = 491

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -2

Query: 217 TSRFLFLRRGHGATPPMRGRRRAYAKTVSKSQPWWHSAVGSAVIRCRNSPKQ 62
           T  F   R  H    PM      Y KT+  +QP W  A       C ++PK+
Sbjct: 414 TVEFCGTRDNH-TNCPMENTFCKYCKTLKGNQPGWKEAAAHHPAVCEHAPKE 464


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform a
           protein.
          Length = 1081

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 159 GDERMLKQCPSRNHGGTLPSARL 91
           G  +M++Q PSR H G  P++R+
Sbjct: 229 GASQMVQQAPSRGHTGAAPASRM 251


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform b
           protein.
          Length = 1647

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 159 GDERMLKQCPSRNHGGTLPSARL 91
           G  +M++Q PSR H G  P++R+
Sbjct: 229 GASQMVQQAPSRGHTGAAPASRM 251


>Z35601-1|CAA84667.2|  320|Caenorhabditis elegans Hypothetical
           protein R10E9.1 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 117 HGCDLDTVLAYARRLPRMGGVAPCPRRKN 203
           +G   +T+LAYA+ LPR GG    P   N
Sbjct: 232 YGMPPETLLAYAQYLPRFGGNLMYPNFTN 260


>AB036738-1|BAB13470.1|  320|Caenorhabditis elegans neural
           RNA-binding protein MSI-1 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 117 HGCDLDTVLAYARRLPRMGGVAPCPRRKN 203
           +G   +T+LAYA+ LPR GG    P   N
Sbjct: 232 YGMPPETLLAYAQYLPRFGGNLMYPNFTN 260


>AL023810-4|CAD59138.1|  384|Caenorhabditis elegans Hypothetical
           protein Y9C2UA.1b protein.
          Length = 384

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 46  CSLGMVVSVSSCTGSQPSRRQSATMVATWTLF*HTLV 156
           C  G  +  ++ T  +PS R + T    W LF + L+
Sbjct: 219 CLFGTCLCCATMTSKKPSSRTTGTFADMWLLFPYGLI 255


>AL008881-3|CAD59164.1|  384|Caenorhabditis elegans Hypothetical
           protein Y9C2UA.1b protein.
          Length = 384

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 46  CSLGMVVSVSSCTGSQPSRRQSATMVATWTLF*HTLV 156
           C  G  +  ++ T  +PS R + T    W LF + L+
Sbjct: 219 CLFGTCLCCATMTSKKPSSRTTGTFADMWLLFPYGLI 255


>AL008881-1|CAA15517.2|  343|Caenorhabditis elegans Hypothetical
           protein Y9C2UA.1a protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 46  CSLGMVVSVSSCTGSQPSRRQSATMVATWTLF*HTLV 156
           C  G  +  ++ T  +PS R + T    W LF + L+
Sbjct: 178 CLFGTCLCCATMTSKKPSSRTTGTFADMWLLFPYGLI 214


>Z66512-8|CAA91324.2|  349|Caenorhabditis elegans Hypothetical
           protein F52H3.4 protein.
          Length = 349

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 299 EMVHSQKSSIAFHDSSSPSIDATTL-GNDKSVPIFATRT 186
           EM + +K  I+ ++SSS S  +TTL G    VP  +T T
Sbjct: 156 EMFNEEKPDISLNNSSSLSSSSTTLQGTTDFVPPSSTMT 194


>U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical
           protein T19D2.1 protein.
          Length = 872

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 1   GESRTEDASLSGSRRCSLGMVVSVSSCTGSQPSRRQSATMVATW 132
           G  RT   +L G+  C  GM+     C GS    R +    +TW
Sbjct: 408 GVIRTAHPALEGTY-CGFGMICRQGQCVGSSQLMRVTVGGWSTW 450


>AL032646-2|CAA21677.1|  260|Caenorhabditis elegans Hypothetical
           protein Y54E2A.3 protein.
          Length = 260

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 40  RRCSLGMVVSVSSCTGSQP 96
           RRCS G ++S   C G+ P
Sbjct: 81  RRCSNGQIISQGRCNGTTP 99


>AF326937-1|AAG49387.1|  260|Caenorhabditis elegans 2P40 protein.
          Length = 260

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 40  RRCSLGMVVSVSSCTGSQP 96
           RRCS G ++S   C G+ P
Sbjct: 81  RRCSNGQIISQGRCNGTTP 99


>AL033512-3|CAA22077.1|  243|Caenorhabditis elegans Hypothetical
           protein Y49A3A.4 protein.
          Length = 243

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 75  FLHRITAEPTAECHHGCDLDTV 140
           F+H + +E  A+ HH C L  V
Sbjct: 12  FIHTVLSEKCADAHHDCRLIAV 33


>AJ010708-1|CAA09308.1| 1158|Caenorhabditis elegans calcium ATPase
           protein.
          Length = 1158

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 110 LCRRLGCDPVQELTETTMPSEHLR 39
           LCR+L  DP+  L   T   EH R
Sbjct: 39  LCRKLKTDPINGLPNDTKELEHRR 62


>AF125446-4|AAD12806.2| 1158|Caenorhabditis elegans Hypothetical
           protein R05C11.3 protein.
          Length = 1158

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 110 LCRRLGCDPVQELTETTMPSEHLR 39
           LCR+L  DP+  L   T   EH R
Sbjct: 39  LCRKLKTDPINGLPNDTKELEHRR 62


>Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical
           protein M01G12.12 protein.
          Length = 1579

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +3

Query: 42  QVLTGHGCFGEFLHRITAEPTAECHHGCD--LDTVLAYARRLPRMGGVAPCPRRKNRNRL 215
           QVLT   C+G+FL  IT     E    C+  L+ ++       R+G +  C  +  + RL
Sbjct: 372 QVLTDEICWGQFLGLIT-HYYLENDKLCEAALEDLIYLIDGRKRIGSIWKCFHKICQKRL 430

Query: 216 VVAKCCGIDARRRRVVEGDARLLRV 290
           V+    G+    + + EG  R+ +V
Sbjct: 431 VMQLTNGMS--EQEIEEGYQRVRKV 453


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore complex
            protein protein6, isoform a protein.
          Length = 1562

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 195  DEDTAPPLPCGAGDERMLKQCPSRNHGGTLPSARL*SGAGTHRNN 61
            D +   P P    DE ++ +  S    G LPS    SG+GT  N+
Sbjct: 1195 DTNLVFPEPSDDEDE-LITESDSSGENGKLPSGNKDSGSGTGNNS 1238


>AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical
           protein M01G12.12 protein.
          Length = 1579

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +3

Query: 42  QVLTGHGCFGEFLHRITAEPTAECHHGCD--LDTVLAYARRLPRMGGVAPCPRRKNRNRL 215
           QVLT   C+G+FL  IT     E    C+  L+ ++       R+G +  C  +  + RL
Sbjct: 372 QVLTDEICWGQFLGLIT-HYYLENDKLCEAALEDLIYLIDGRKRIGSIWKCFHKICQKRL 430

Query: 216 VVAKCCGIDARRRRVVEGDARLLRV 290
           V+    G+    + + EG  R+ +V
Sbjct: 431 VMQLTNGMS--EQEIEEGYQRVRKV 453


>AF192746-1|AAF08804.1|  401|Caenorhabditis elegans synapsin
           protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 257 SSSPSIDATTLGNDKSVPIFATRTRRHPSHAGQATS 150
           ++SP+  A T G+    P  A  TRR P H   +++
Sbjct: 312 ATSPTTSAVTNGHGNHGPAPAVPTRRLPPHPSSSSA 347


>AC006743-3|AAF60504.2|  401|Caenorhabditis elegans Synapsin protein
           1, isoform a protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 257 SSSPSIDATTLGNDKSVPIFATRTRRHPSHAGQATS 150
           ++SP+  A T G+    P  A  TRR P H   +++
Sbjct: 312 ATSPTTSAVTNGHGNHGPAPAVPTRRLPPHPSSSSA 347


>AC006743-2|AAM97971.1|  474|Caenorhabditis elegans Synapsin protein
           1, isoform b protein.
          Length = 474

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 257 SSSPSIDATTLGNDKSVPIFATRTRRHPSHAGQATS 150
           ++SP+  A T G+    P  A  TRR P H   +++
Sbjct: 385 ATSPTTSAVTNGHGNHGPAPAVPTRRLPPHPSSSSA 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,236,022
Number of Sequences: 27780
Number of extensions: 179385
Number of successful extensions: 603
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)