Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6284
         (302 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   0.47 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   0.47 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.83 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   1.9  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   3.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   3.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   3.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   5.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    20   7.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   7.7  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 0.47
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 207 SYFCDEDTAPPLPCGAGDE 151
           +Y   EDT  P  CGAG E
Sbjct: 388 TYISWEDTQDPQGCGAGKE 406


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 0.47
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 207 SYFCDEDTAPPLPCGAGDE 151
           +Y   EDT  P  CGAG E
Sbjct: 388 TYISWEDTQDPQGCGAGKE 406


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 0.83
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +2

Query: 89   HSRADGRVPPWLRLGHCFSIRSSPAPHGRGGAVSSSQK 202
            HS  D R   +  L HC   R  P P   G A   S +
Sbjct: 1679 HSTWDPRRHMYEELNHCAPNRRCPPPPRMGSAEGLSHR 1716


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 10/41 (24%), Positives = 15/41 (36%)
 Frame = +2

Query: 122 LRLGHCFSIRSSPAPHGRGGAVSSSQK*EPTCRCQVLWHRC 244
           + LG    I  SPA       + + +  +  C     WH C
Sbjct: 436 VNLGSACRIHGSPATTAAPPQLPTEESVDALCNTLHHWHHC 476


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 145 AKTVSKSQPWWHSAVGSAVIRCRN 74
           AK VSKS   +   VG + + C N
Sbjct: 308 AKVVSKSGVLFFGLVGDSALGCWN 331


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 145 AKTVSKSQPWWHSAVGSAVIRCRN 74
           AK VSKS   +   VG + + C N
Sbjct: 308 AKVVSKSGVLFFGLVGDSALGCWN 331


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 145 AKTVSKSQPWWHSAVGSAVIRCRN 74
           AK VSKS   +   VG + + C N
Sbjct: 308 AKVVSKSGVLFFGLVGDSALGCWN 331


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 154 RAYAKTVSKSQPWWHSAVGSAVIRCRN 74
           ++ AK VSK+   +   VG++ + C N
Sbjct: 303 QSLAKAVSKNGVLFVGLVGNSAVGCWN 329


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 154 RAYAKTVSKSQPWWHSAVGSAVIRCRN 74
           +++ K VSK+   +   VG++ I C N
Sbjct: 308 QSFGKVVSKNGVLFLGLVGNSGIACVN 334


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -3

Query: 159 GDERMLKQCPSRNHGGTLP 103
           G      Q PS+NH   +P
Sbjct: 626 GSSPHFHQSPSQNHSSAVP 644


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,723
Number of Sequences: 438
Number of extensions: 2298
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)