Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6280
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        29   0.65 
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    27   3.5  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   4.6  
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    26   6.0  

>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 69

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 431 KTSVLYYFW*IRDLLKIPKTILVWFFYSNNNGRWYHRVHIFSILQLYIL 577
           K ++L+Y W  RDL  +P  +     Y+ +N ++Y     F++L  Y++
Sbjct: 2   KRALLFYLWNQRDLRILPIVVSFLINYTCDN-KFYSSPSTFALLSSYLI 49


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +3

Query: 129 IIPVNYITWYT-KTLSLMLY 185
           IIPV  ITWYT +T+S ML+
Sbjct: 296 IIPVMSITWYTYETVSKMLH 315


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 267 NKIVFYFREFPSIRIELNLIEIQYIFINITLAIMF 163
           N+   +F +   + + LNL E+ Y+   ITL   F
Sbjct: 99  NRFQLFFEKVIEVSLSLNLSEVVYMIQFITLCFQF 133


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 192 KYIEFQLSLVRYELKEILESKKQFCLRFNRIQFHLCNKK 308
           + +E +   V  +L++I+E KK+ C R     F + N+K
Sbjct: 256 RLVESERKFVDNKLRKIVELKKEVCERDPTANFVIINQK 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,151
Number of Sequences: 5004
Number of extensions: 52588
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)