Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6280
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82057-3|CAB04860.2|  303|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z49937-8|CAD44113.1|  546|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z49867-4|CAD44109.1|  546|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z92812-7|CAB07281.2|  341|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine rece...    29   4.3  

>Z82057-3|CAB04860.2|  303|Caenorhabditis elegans Hypothetical
           protein T26H8.2 protein.
          Length = 303

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 408 CNLAHSVLI*SIIQPYNYNRRSLTNWKTAILFSFFYYT-NEIEFY*NVNKIVFYFREFPS 232
           C++   +   SI    N  +  + +W  AI  SF++Y  N+ + + N     F+F   PS
Sbjct: 106 CSIVAPISYESIFNSSNTKQLIIISWALAIFPSFYFYVYNDCKLFYNEVFSAFFFTRSPS 165


>Z49937-8|CAD44113.1|  546|Caenorhabditis elegans Hypothetical
           protein C33D3.5 protein.
          Length = 546

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -2

Query: 523 IVVRVKKPNQNRLRYFQKISYLPK 452
           +VVR++KP++     ++K++Y PK
Sbjct: 466 VVVRIQKPSKTEFENYKKVNYYPK 489


>Z49867-4|CAD44109.1|  546|Caenorhabditis elegans Hypothetical
           protein C33D3.5 protein.
          Length = 546

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -2

Query: 523 IVVRVKKPNQNRLRYFQKISYLPK 452
           +VVR++KP++     ++K++Y PK
Sbjct: 466 VVVRIQKPSKTEFENYKKVNYYPK 489


>Z92812-7|CAB07281.2|  341|Caenorhabditis elegans Hypothetical
           protein T03E6.8 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 434 TSVLYYFW*IRDLLKIPKTILVWFFYSNNNGRWYHRVHIFSILQLYILYI 583
           +SVL+  + +  LL IP  IL W F + N  +    V    + Q+ I ++
Sbjct: 14  SSVLFLVFRLVPLLSIPSYILAWVFITRNKSKVVQAVKKLYLKQMLINFM 63


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 261  FCLRFNRIQFHLCNKKTKIKLRFSNL*ETFDYNYTVVLLTILILNAPNYSSLQTISRKL 437
            F L  +R  + L  K T+ KLR   +        T + LTI  +  P+ S ++TI + L
Sbjct: 1932 FQLHMDRDSYELAVKGTRTKLRRKQMETVEQMLETKICLTIFGITEPHTSIIETIWKSL 1990


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 261  FCLRFNRIQFHLCNKKTKIKLRFSNL*ETFDYNYTVVLLTILILNAPNYSSLQTISRKL 437
            F L  +R  + L  K T+ KLR   +        T + LTI  +  P+ S ++TI + L
Sbjct: 1932 FQLHMDRDSYELAVKGTRTKLRRKQMETVEQMLETKICLTIFGITEPHTSIIETIWKSL 1990


>U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 3 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 198 IEFQLSLVRYELKEILESKK-QFCLRFNRIQF 290
           I++    VRYE++EIL+S K  F +RF  + F
Sbjct: 216 IKYYSLSVRYEMEEILQSSKFTFIIRFTHLLF 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,849,600
Number of Sequences: 27780
Number of extensions: 275648
Number of successful extensions: 545
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)