Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6280
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   4.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.5  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = -3

Query: 363 YNYNRRSLTNWKTAILFSFFYYTNEIEFY*NVNKIVFYFREFPSIRIELNLIEIQ 199
           YN++ ++  N   + L S+     +  FY    KI+ YF  +  ++ + +  E+Q
Sbjct: 393 YNFDFQNKNNLIPSALQSYSTSMRDPAFYMLYQKILSYFLRYKKLQPQYSQSELQ 447


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 576 SIYNCKIEKMCTR*YQRPLLFE*KNQTKIVLGI 478
           ++Y  K+   C   Y R ++ E KN TKI  G+
Sbjct: 36  ALYRLKLYLFCD--YDRDIIPEQKNATKIDFGL 66


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 582 IYSIYNCKIEKMCTR*YQRPLLFE*KNQTKIVLGIFKRSRIYQK*YKTEVFGK 424
           IYS+Y   I +  T+  Q P L+E      +    F  S + QK     +FGK
Sbjct: 141 IYSLYTAVITRPDTKFIQLPPLYE------MCPYFFFNSEVLQKANHALIFGK 187


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 582 IYSIYNCKIEKMCTR*YQRPLLFE*KNQTKIVLGIFKRSRIYQK*YKTEVFGK 424
           IYS+Y   I +  T+  Q P L+E      +    F  S + QK     +FGK
Sbjct: 141 IYSLYTAVITRPDTKFIQLPPLYE------MCPYFFFNSEVLQKANHALIFGK 187


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = -3

Query: 363 YNYNRRSLTNWKTAILFSFFYYTNEIEFY*NVNKIVFYFREFPSIRIELNLIEIQ 199
           YN++ ++  N   + L S+     +  FY     I+ YF  +  ++ + +  E+Q
Sbjct: 393 YNFDFQNKNNLIPSALQSYSTSMRDPAFYMLYQNILSYFLRYKKLQPQYSQSELQ 447


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,551
Number of Sequences: 438
Number of extensions: 4480
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)