Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6279
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0405 - 3207977-3208018,3208097-3208215,3208303-3208429,320... 137 1e-32
12_02_1187 - 26793455-26793496,26793599-26793717,26793813-267939... 126 2e-29
05_06_0151 - 25999366-26000044,26004820-26005637 31 1.2
08_02_0020 + 11303438-11304213,11304321-11304699 30 2.2
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583... 29 3.8
11_01_0674 - 5502275-5502954,5503054-5504746 28 8.8
04_04_0725 - 27581658-27581663,27582379-27582481,27582697-275830... 28 8.8
03_06_0284 + 32836171-32836377,32836466-32836568,32836681-328367... 28 8.8
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377... 28 8.8
>12_01_0405 -
3207977-3208018,3208097-3208215,3208303-3208429,
3208776-3208914,3209001-3209227,3209389-3209522,
3209659-3209779
Length = 302
Score = 137 bits (331), Expect = 1e-32
Identities = 80/186 (43%), Positives = 122/186 (65%), Gaps = 2/186 (1%)
Frame = +1
Query: 133 KNIGNVLNDPSRPMKERFRALFTLRNIGGETAIQCISECFKDESVLLKHELAYCLGQMQD 312
K + ++L D ++P+ ERFRALF+LRN+ G+ + + +D S LL HE A+ LGQMQD
Sbjct: 3 KFLCDLLLDTAQPIAERFRALFSLRNLHGDGPRCALLQAARDSSNLLAHEAAFALGQMQD 62
Query: 313 RRAIPILRSVLEDPNHDPIVRHEAGEALGAIG-DPNLRELLEKYQHDSAIEVAETCQIAL 489
AIP L +VL+D + PIVRHEA EALGAIG + ++ L E D A+EV ETC++AL
Sbjct: 63 AEAIPALEAVLKDLSLHPIVRHEAAEALGAIGLEKSIPLLEESLAADPAVEVQETCELAL 122
Query: 490 QRLNWVANDSKENDNLSKSLYTSVDPAPPSIEN-NLEALKDVYLDETKPLFIRYRAMV*F 666
+R+ N + +++ + S + SVDPA P+ + ++ L+++ L+E + ++ RY A+ F
Sbjct: 123 RRIEQQKN-AGVSESTTISPFLSVDPALPAKQGLSVHQLREILLNEQESMYERYAAL--F 179
Query: 667 A*FRND 684
A RND
Sbjct: 180 A-LRND 184
Score = 98.7 bits (235), Expect = 4e-21
Identities = 50/126 (39%), Positives = 76/126 (60%)
Frame = +1
Query: 127 AVKNIGNVLNDPSRPMKERFRALFTLRNIGGETAIQCISECFKDESVLLKHELAYCLGQM 306
+V + +L + M ER+ ALF LRN + A+ I +S LLKHE+AY LGQ+
Sbjct: 156 SVHQLREILLNEQESMYERYAALFALRNDSRDAAVSAIVAALGAKSALLKHEVAYVLGQL 215
Query: 307 QDRRAIPILRSVLEDPNHDPIVRHEAGEALGAIGDPNLRELLEKYQHDSAIEVAETCQIA 486
Q++ A L +VL++ + P+VRHEA EALG+I D LLE++ D V+++C++A
Sbjct: 216 QNKAASDALSTVLKNVDEHPMVRHEAAEALGSIADQESIALLEEFAKDPEPIVSQSCEVA 275
Query: 487 LQRLNW 504
L L +
Sbjct: 276 LSMLEY 281
>12_02_1187 -
26793455-26793496,26793599-26793717,26793813-26793939,
26794382-26794520,26794565-26794833,26794923-26795056,
26795630-26795750
Length = 316
Score = 126 bits (303), Expect = 2e-29
Identities = 68/144 (47%), Positives = 96/144 (66%), Gaps = 1/144 (0%)
Frame = +1
Query: 151 LNDPSRPMKERFRALFTLRNIGGETAIQCISECFKDESVLLKHELAYCLGQMQDRRAIPI 330
L D ++P+ ERFRALF+LRN+ G+ + + + +D S LL HE A+ LGQMQD AIP
Sbjct: 9 LLDAAQPIAERFRALFSLRNLRGDAPRRALLQAARDSSNLLAHEAAFALGQMQDAEAIPA 68
Query: 331 LRSVLEDPNHDPIVRHEAGEALGAIG-DPNLRELLEKYQHDSAIEVAETCQIALQRLNWV 507
L +VL+D + PIVRHEA EALGAIG + ++ L E D A+EV ETC++A++R+
Sbjct: 69 LEAVLKDLSLHPIVRHEAAEALGAIGLEKSISLLEESLAVDPAVEVQETCELAIRRIEEQ 128
Query: 508 ANDSKENDNLSKSLYTSVDPAPPS 579
N S ++ + S + SVDPA P+
Sbjct: 129 KNTSGV-ESATVSPFLSVDPALPA 151
Score = 97.9 bits (233), Expect = 7e-21
Identities = 50/119 (42%), Positives = 75/119 (63%)
Frame = +1
Query: 148 VLNDPSRPMKERFRALFTLRNIGGETAIQCISECFKDESVLLKHELAYCLGQMQDRRAIP 327
+LN+ M ER+ ALF LRN G+ A+ I +S LL+HE+AY LGQ+Q++ A
Sbjct: 178 LLNE-QESMYERYAALFALRNDSGDAAVSAIVAALGVKSALLRHEVAYVLGQLQNKAASD 236
Query: 328 ILRSVLEDPNHDPIVRHEAGEALGAIGDPNLRELLEKYQHDSAIEVAETCQIALQRLNW 504
L +VL++ + P+VRHEA EALG+I D LLE++ D V+++C++AL L +
Sbjct: 237 ALSTVLKNVDEHPMVRHEAAEALGSIADQESIALLEEFAKDPEPIVSQSCEVALSMLEY 295
>05_06_0151 - 25999366-26000044,26004820-26005637
Length = 498
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 172 LAWRDHLEHSRCFSLRSHSRLPFDFIIFECF 80
LAW D L H+ +++ SH R P ++F CF
Sbjct: 267 LAWLDRLSHTHVYNIVSH-RQPDRSVVFLCF 296
>08_02_0020 + 11303438-11304213,11304321-11304699
Length = 384
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Frame = +1
Query: 169 PMKERFRALFTLRNIGGETAIQCISECFKDES--VLLKHELAYC----LGQMQDRRAIPI 330
PM LF L + G TA I C++ + + LA C G+M+ R +
Sbjct: 7 PMLLPLAVLFLLGSGGVATAANVIDRCWRGQRNWAADRQRLAVCSVGFAGKMRQNRGAGV 66
Query: 331 LRSVLEDPNHDPI 369
+ + DP+ DP+
Sbjct: 67 VAYTVTDPSDDPV 79
>03_02_1035 -
13557425-13557721,13557855-13558058,13558143-13558332,
13558450-13558841,13558931-13559023,13559297-13559500,
13559572-13559635,13559760-13559806,13559825-13559971,
13560243-13560335,13560420-13560599,13560993-13561128,
13561216-13561466,13561556-13561669,13561794-13561991,
13562050-13562110,13562921-13563210
Length = 986
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Frame = +1
Query: 238 ISECFKDESVLLKHELAYCLGQM--------QDRRAIPILRSVLEDPNHDPIVRHEAGEA 393
+ C KD+ ++ A C+ ++ +DR + L+ ++ D N P+V A A
Sbjct: 216 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLEALKDLISDNN--PMVVANAVAA 273
Query: 394 LGAIGDPNLRELLEKYQH 447
L I D + R + E H
Sbjct: 274 LAEIQDSSTRPIFEITSH 291
>11_01_0674 - 5502275-5502954,5503054-5504746
Length = 790
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -2
Query: 638 NNGFVSSRYTSLS-ASKLFS-MLGGAGSTEVY 549
N+G V+ RYT LS A+K+FS LG G V+
Sbjct: 517 NSGIVAFRYTDLSHATKIFSEKLGSGGFGSVF 548
>04_04_0725 -
27581658-27581663,27582379-27582481,27582697-27583025,
27583263-27583365,27583490-27583671,27584135-27584324,
27584570-27584665,27584960-27585054,27585396-27585590
Length = 432
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/54 (22%), Positives = 29/54 (53%)
Frame = +1
Query: 496 LNWVANDSKENDNLSKSLYTSVDPAPPSIENNLEALKDVYLDETKPLFIRYRAM 657
+++++ D + + S+D P ++ +++ D Y+DE P+ +R RA+
Sbjct: 141 ISYLSKDVTIVKRIPYEVMMSMDKLPWTMRAPRKSMPDFYIDEVLPILMRRRAL 194
>03_06_0284 +
32836171-32836377,32836466-32836568,32836681-32836757,
32836846-32837037,32837144-32837263,32837350-32837412,
32837537-32837671,32837827-32837991,32838104-32838181,
32840303-32840389,32840548-32840619,32840925-32840951,
32842292-32842390,32843143-32843213,32843710-32843838,
32843936-32844012,32844186-32844226,32844319-32844393,
32844525-32844673,32844766-32844870,32844948-32845023,
32845465-32845541,32845761-32846529
Length = 997
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 118 SENAV-KNIGNVLNDPSRPMKERFRALFTLRNIGGETAIQCISEC-FKDESVLL 273
S NA+ K G+++NDP+ P+K + F + G A Q I++ F DE LL
Sbjct: 542 SSNALPKYYGDLMNDPNSPLKSFYPKDFEIDMNGKRFAWQGIAKLPFIDERRLL 595
>02_05_1331 + 35736543-35736638,35737407-35737525,35737670-35737715,
35738117-35738172,35738452-35738547,35738844-35738961,
35739406-35739672,35740023-35740124,35740302-35740659,
35740750-35740863,35741045-35741676,35741895-35742103,
35742597-35742819,35743419-35743538,35743888-35743914,
35744281-35745045,35745431-35748511
Length = 2142
Score = 27.9 bits (59), Expect = 8.8
Identities = 21/93 (22%), Positives = 41/93 (44%)
Frame = +1
Query: 343 LEDPNHDPIVRHEAGEALGAIGDPNLRELLEKYQHDSAIEVAETCQIALQRLNWVANDSK 522
L+ PN + + H+ G + I L+ L+ +QH + A+ I L + + ND
Sbjct: 1497 LDTPNSNDDILHQGGSGVHGINANELQSALQGHQH--LLSRADIALILLAEIAY-ENDED 1553
Query: 523 ENDNLSKSLYTSVDPAPPSIENNLEALKDVYLD 621
+NL + + S + LE +D+ ++
Sbjct: 1554 FRENLPLLFHVTCVSMDSSEDIVLEHCQDLLVN 1586
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,515,209
Number of Sequences: 37544
Number of extensions: 356320
Number of successful extensions: 909
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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