Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6279
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49909-1|CAA90105.1|  298|Caenorhabditis elegans Hypothetical pr...   199   1e-51

>Z49909-1|CAA90105.1|  298|Caenorhabditis elegans Hypothetical
           protein C14A4.1 protein.
          Length = 298

 Score =  199 bits (486), Expect = 1e-51
 Identities = 96/180 (53%), Positives = 124/180 (68%)
 Frame = +1

Query: 118 SENAVKNIGNVLNDPSRPMKERFRALFTLRNIGGETAIQCISECFKDESVLLKHELAYCL 297
           S+  + + G  LND  +P+K RFRALF LRNIG + ++  I +C  DES LLKHELAYCL
Sbjct: 8   SDAEIDSFGEALNDTKKPLKARFRALFILRNIGCDRSVDWIGKCLNDESALLKHELAYCL 67

Query: 298 GQMQDRRAIPILRSVLEDPNHDPIVRHEAGEALGAIGDPNLRELLEKYQHDSAIEVAETC 477
           GQMQ++ AIP L SVLED   +P+VRHEAGEALGAI DP+++++L KY  D   EV+ETC
Sbjct: 68  GQMQNKHAIPTLVSVLEDEKQEPMVRHEAGEALGAIADPSVKDVLRKYAQDPCPEVSETC 127

Query: 478 QIALQRLNWVANDSKENDNLSKSLYTSVDPAPPSIENNLEALKDVYLDETKPLFIRYRAM 657
           QIAL R+ WV    K+    + S Y SVDP P +  +++E L    +D + PLF RYRAM
Sbjct: 128 QIALGRVEWVEKSGKD----TNSPYDSVDPTPSASTSDVEELAATLIDASLPLFDRYRAM 183



 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 48/136 (35%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
 Frame = +1

Query: 112 NVSENAVKNIGNVLNDPSRPMKERFRALFTLRNIGGETAIQCISE-CFKDESVLLKHELA 288
           + S + V+ +   L D S P+ +R+RA+F+LRNI  + +I+ +++  + ++S L +HE+A
Sbjct: 156 SASTSDVEELAATLIDASLPLFDRYRAMFSLRNIKTDKSIKALAQGLYCEDSALFRHEVA 215

Query: 289 YCLGQMQDRRAIPILRSVLEDPNHDPIVRHEAGEALGAIGDPNLRELLEKYQHDSAIEVA 468
           Y LGQ+Q   A   L+  L     + +VRHE  EALGAI +    E+L++Y +D    V 
Sbjct: 216 YVLGQLQSPVATQELKDRLLLSTENCMVRHECAEALGAIANEECTEILKQYVNDEERVVR 275

Query: 469 ETCQIALQRLNWVAND 516
           E+C++AL    +  +D
Sbjct: 276 ESCEVALDMAEYENSD 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,288,333
Number of Sequences: 27780
Number of extensions: 327772
Number of successful extensions: 930
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)