Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6279
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.0  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 398 PRASPASWRTIGSWFGSSNTLLN 330
           P A PA   ++  W G  N+LLN
Sbjct: 401 PDAIPAFLSSLFLWLGYCNSLLN 423


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 435 FEQLSEIRVSYCPKGFSGFMAN 370
           FE+LS +R  Y      GF+ N
Sbjct: 862 FERLSHLRELYLQNNLIGFIGN 883


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 391 ALGAIGDPNLRELLEKY 441
           ALG IG+P +  + E Y
Sbjct: 636 ALGMIGEPKILSVFEPY 652


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 220 RHRCFLM*TGLENALSLAWRDHLEHSRCFSLRS 122
           R  C L    L+  LS A+   L +S  FS+ S
Sbjct: 448 RDTCLLASDALKQILSAAYNVELHNSSPFSIYS 480


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 220 RHRCFLM*TGLENALSLAWRDHLEHSRCFSLRS 122
           R  C L    L+  LS A+   L +S  FS+ S
Sbjct: 486 RDTCLLASDALKQILSAAYNVELHNSSPFSIYS 518


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,833
Number of Sequences: 438
Number of extensions: 4052
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)