Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6278
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   1.3  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   4.1  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    24   7.1  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 54  GGRAHSPPGVKWLLEPIDIYN 116
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 179 PHPSNRNALLLHGRNRQSGGTYP 247
           PHP N   +LL G N Q+  + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 19/80 (23%), Positives = 36/80 (45%)
 Frame = -1

Query: 302 LNVIVSTSYWW*DLL*VCAGRYHHSAYFCREAVMRFGLKGGAAVVTILEILELIPQDGWR 123
           L++     + +  +L V +GR    A+ C E       +    + + L+++   PQ G R
Sbjct: 164 LDICFHEDFGFKHILWVYSGRRGIHAWICDEIACSLDDRSRRMIASYLQVVVGNPQGGVR 223

Query: 122 ICVVDVNGLQ*PLNTRWTVS 63
           +    +N L+ PL+   T S
Sbjct: 224 L----INNLKRPLHPHLTRS 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,637,548
Number of Sequences: 5004
Number of extensions: 30882
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)