Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6278
         (383 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0828 - 11592080-11592171,11592288-11592354,11592748-115928...    27   3.8  
07_01_0941 + 7951592-7953064                                           27   5.1  
11_06_0321 - 22341267-22342565                                         26   8.9  
06_02_0262 + 13563082-13563633                                         26   8.9  
05_07_0098 + 27672298-27672561,27672617-27672705,27673111-276731...    26   8.9  
03_02_0120 - 5728572-5728712,5728812-5728916,5729178-5729441,572...    26   8.9  
01_01_1014 - 8022787-8023935                                           26   8.9  

>03_02_0828 -
           11592080-11592171,11592288-11592354,11592748-11592837,
           11592914-11592967,11593109-11593169,11593252-11593319,
           11593513-11593596,11594257-11594349,11594513-11594593,
           11594665-11594793,11595193-11595273,11595401-11595484,
           11596816-11596842,11597027-11597094,11597481-11597619
          Length = 405

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 364 IGY-RAPPRVFFFFSISPRRGD*T 296
           IGY R PP V+FF+  SP + D T
Sbjct: 334 IGYPRPPPGVYFFYEFSPIKVDFT 357


>07_01_0941 + 7951592-7953064
          Length = 490

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 78  GVKWLLEPIDIYNANAPPILRYKF*DLKYSYNGC 179
           G   L+ P+    A  PP+ R  + D  + Y+GC
Sbjct: 124 GYARLVNPLTAATAPLPPLWRLPYLDAAHGYDGC 157


>11_06_0321 - 22341267-22342565
          Length = 432

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 297 RNCIDKLLVVGPLVSLRG*VPPLCLFLP 214
           R C DKL+V+G + +  G V  +C ++P
Sbjct: 378 RGCGDKLIVIGGMSAPGGGVIEICSWIP 405


>06_02_0262 + 13563082-13563633
          Length = 183

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 306 PRRGDIEKKKNTRGG 350
           PRRGD E+++  RGG
Sbjct: 118 PRRGDAERRRRRRGG 132


>05_07_0098 +
           27672298-27672561,27672617-27672705,27673111-27673159,
           27673217-27673304,27673891-27674020,27674790-27675366
          Length = 398

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 174 RCNYT*DLRTYTSRWVAHLRCRC 106
           RC  T  LR    RW  HL+C C
Sbjct: 301 RCTGTTVLRNKAPRWHEHLQCWC 323


>03_02_0120 -
           5728572-5728712,5728812-5728916,5729178-5729441,
           5729809-5729958,5730070-5730150,5730481-5730597,
           5730679-5730831,5731426-5731569,5731773-5731802,
           5732070-5732430,5732682-5732849,5733371-5733600,
           5734088-5734194,5734275-5734623
          Length = 799

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 252 DSQEVLPPVTCRYNYV*SPRRGDIEKKKNTRGG 350
           D  ++LP +  +Y+   S   GDIEK K T  G
Sbjct: 535 DRSQILPTLLIQYSRFLSLAIGDIEKAKETLTG 567


>01_01_1014 - 8022787-8023935
          Length = 382

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
 Frame = +1

Query: 49  RWVDELTVHLVLSGYWSPLTSTTQMRHPXXXXXXXXXXXVTTAAPPFK-----PKRITAS 213
           R  +E+ +     G+W  L S   + H            +   APPF      P+RI   
Sbjct: 8   RAAEEMQMREAAKGWWVILVSVPHVAHDEFHFPPGTELRLNFGAPPFASRITVPRRIAPD 67

Query: 214 RQK*AEWWYLPA 249
           R+    + YL A
Sbjct: 68  RKAIDNYPYLAA 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,757,145
Number of Sequences: 37544
Number of extensions: 241637
Number of successful extensions: 549
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)