Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6275
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 190 2e-49
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 101 1e-22
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.9
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 3.8
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual 26 5.1
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 26 5.1
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 6.7
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 190 bits (462), Expect = 2e-49
Identities = 85/171 (49%), Positives = 121/171 (70%)
Frame = +2
Query: 2 DFIIKAVAAACKRVPTVNSHWMESFIRQFSNVDVSVAVATPTGLITPILHNADSRGIIDL 181
D +IKA AA ++VP VN+ WM FIRQ+ NVD+S+AVATP+GLITP++ N + G+ ++
Sbjct: 313 DLVIKATTAALRQVPEVNAAWMGDFIRQYKNVDISMAVATPSGLITPVIRNTHALGLAEI 372
Query: 182 SKNMKQLAQKAKDGKLQPQEYQGGTVTVSNLGMYGITMFNAIINPPQSFIIACGGVQELV 361
S K Q+A++ KL+P+EYQGGT T+SNLGM+ + F AIINPPQ+ I+A G + V
Sbjct: 373 STLAKDYGQRARNNKLKPEEYQGGTFTISNLGMFPVDQFTAIINPPQACILAVGTTVDTV 432
Query: 362 IPDQSEPNGFRTAKFVTFTASADHRVVDGAIGAQWMKVFKENLEDPANIIL 514
+PD + GF+ A + T S+DHRVVDGA+ A++ K+ LE+P I+L
Sbjct: 433 VPDSTSEKGFKVAPIMKCTLSSDHRVVDGAMAARFTTALKKILENPLEIML 483
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 101 bits (241), Expect = 1e-22
Identities = 61/178 (34%), Positives = 100/178 (56%), Gaps = 8/178 (4%)
Frame = +2
Query: 5 FIIKAVAAACKRVPTVNSHWM-----ESFI-RQFSNVDVSVAVATPTGLITPILHNADSR 166
F KA A K++P +N ++ + R F D+S+AVATP GL+TP++ NA+S
Sbjct: 281 FFSKACTQAMKQIPAINGSIEGEGKGDTLVYRDFC--DLSIAVATPKGLVTPVIRNAESM 338
Query: 167 GIIDLSKNMKQLAQKAKDGKLQPQEYQGGTVTVSNLGMYGITMFNAIINPPQSFIIACGG 346
++++ + L KA+ GKL ++ GT T+SN G++G IIN PQ+ ++
Sbjct: 339 SLLEIESAIATLGSKARAGKLAIEDMASGTFTISNGGIFGSLYGTPIINLPQTAVLGLHA 398
Query: 347 VQE--LVIPDQSEPNGFRTAKFVTFTASADHRVVDGAIGAQWMKVFKENLEDPANIIL 514
++E +VI Q P R ++ T DHR+VDG ++++ KE +EDPA ++L
Sbjct: 399 IKERPVVINGQVVP---RPMMYLALT--YDHRMVDGREAVTFLRLVKEYIEDPAKMLL 451
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 2.9
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Frame = +1
Query: 247 GRYCHGIEPRNVRYYDVQ-RHHQSPPVVHYSLRRRTRTGHSRP--K*TKRLPNSQVRHVH 417
G++ + P NVR ++ R H+S S++R+ + K K P +Q R +
Sbjct: 25 GKHQQFLVPNNVRLKFLRDRLHKSLKNFD-SVKRKVEIANDEGNNKLLKSSPKAQTRDEN 83
Query: 418 SVGRPQGGGRSDRRSMDESIQGEPRRSRQHHFINRE 525
+ + GG S+R SM E+ + + INR+
Sbjct: 84 TPSEFKNGGFSNRESMSENCFSKSSTNLPRLDINRD 119
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 38 RVPTVNSHWMESFIRQFSNV--DVSVAVATPTGLITPILHNADSRGIIDLSKNM 193
R ++ H + +R + N+ D++V + +PT TP++ + L+KN+
Sbjct: 405 RSKLMSLHLIYHILRTYMNILSDINVKIRSPTSTPTPLIDAVKQYICLALAKNV 458
>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 131 LITPILHNADSRGIIDLSKNMKQL 202
L PI+HN DS+ I+D K + +L
Sbjct: 125 LEVPIIHNGDSKTILDELKKVIEL 148
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 92 NVDVSVAVATPTGLITP--ILHNADSRGIIDLSKNMKQLAQKAKDGKLQPQEYQGGTV 259
+VD V P L+ ++ + +DL + K++A++ K P +YQ GT+
Sbjct: 521 HVDPEAQVGGPIALVQDGDVIEINAVKNTLDLMVDEKEMARRRSVWKAPPLKYQQGTL 578
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 391 PNSQVRHVHSVGRPQGGGRSDRRS 462
P + V H S RP+GGG RRS
Sbjct: 238 PGTIVTHNTSNFRPEGGGHRHRRS 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,238
Number of Sequences: 5004
Number of extensions: 56090
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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