Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6275
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    25   0.60 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   9.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.8  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 132 RPVGVATATLTSTLENCLMKDSIQCELTV 46
           RP  +A+    +TL +CL  +  QCE  +
Sbjct: 158 RPAYLASKCALTTLTDCLRSELAQCESNI 186


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +2

Query: 305 IINPPQSFIIACGGVQELVIPDQSEPN 385
           I++ P+S     GG+++ +IPD+++P+
Sbjct: 176 IVSYPKSRSRKKGGLKDNLIPDKNDPD 202


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 313  SPPVVHYSLRRRTRTGHSRPK*TKRLPNSQVRHVHSVGRPQGGGRSDRRSMDESIQGEPR 492
            SPP      R  +R   S    TK   +S+ R VH+ G+ +   R    S  +  Q + +
Sbjct: 1396 SPPTPLSISRAGSRDEDSTRDSTKLDRSSREREVHNGGQQEDRDRKTLTSAPQQPQQQQQ 1455

Query: 493  RSRQ 504
            + +Q
Sbjct: 1456 QQQQ 1459



 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +1

Query: 391 PNSQVRHVHSVGRPQGGGRSDRRSMDESIQGEPRRSRQ 504
           P+ Q+ H H    PQ   ++  +   +  Q +P++ +Q
Sbjct: 810 PHQQLHH-HQSTHPQAQAQAQPQQQQQQQQQQPQQQQQ 846


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 239 EYQGGTVTVSNLGMYGITMFNAI 307
           E +GG   +SN    G+T + A+
Sbjct: 316 EAEGGIYDISNKRRLGLTEYQAV 338


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 125 SESPRPHSRLRWRIVL*KTPSNV 57
           S SPRP S     +VL   PSN+
Sbjct: 839 STSPRPASSTAATLVLSGCPSNM 861


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,856
Number of Sequences: 438
Number of extensions: 4356
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)