Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6274
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    26   0.42 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    26   0.42 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    26   0.42 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    26   0.42 
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   3.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.0  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 231 YGTKNYNNNCELLDLLIEFI 290
           Y   NYNNNC+ L   I +I
Sbjct: 100 YNNNNYNNNCKKLYYNINYI 119


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 231 YGTKNYNNNCELLDLLIEFI 290
           Y   NYNNNC+ L   I +I
Sbjct: 100 YNNNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 231 YGTKNYNNNCELLDLLIEFI 290
           Y   NYNNNC+ L   I +I
Sbjct: 100 YNNNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 231 YGTKNYNNNCELLDLLIEFI 290
           Y   NYNNNC+ L   I +I
Sbjct: 100 YNNNNYNNNCKKLYYNINYI 119


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 243 NYNNNCELLDLLIEFI 290
           NYNNNC+ L   I +I
Sbjct: 99  NYNNNCKKLYYNINYI 114


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 86  ASQVANVKESRNRLYNTDDAFIVHNTECLVN 178
           A++  NV+  RN L     +     TEC+ N
Sbjct: 234 ATESENVRPRRNVLIERAKSIRARRTECVTN 264


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 240 KNYNNNCELLDLLIEFI*YRGVKGY 314
           KN+NN+ ++   LI+F   +  K Y
Sbjct: 294 KNFNNDDDIKSYLIQFFANKNQKFY 318


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 423 DSIQITEEVFCHLISIH 473
           DSI    E FC +IS+H
Sbjct: 155 DSISQANEGFCAVISMH 171


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 423 DSIQITEEVFCHLISIH 473
           DSI    E FC +IS+H
Sbjct: 150 DSISQANEGFCAVISMH 166


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 243 NYNNNCELL 269
           NYNNNC+ L
Sbjct: 346 NYNNNCKKL 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,713
Number of Sequences: 438
Number of extensions: 3948
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)