Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6273
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.0  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   6.0  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   6.0  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   8.0  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +1

Query: 40  ATRSVYPEC*IVLLF*ITMATYAQFKHVELYKIGHGKNRVPNAPKSCIAEIFNGDMTD 213
           A RS++    I L+F +  ATY    +VE     + +N   N+ +S I  +   +M +
Sbjct: 150 AIRSIFGAWLIALIFAMPFATYVDINYVE-----YPQNSKRNSEESAICAMLKENMPE 202


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 601  CIRHR*LGCLLAGSQP 554
            C+ HR L C+L  S P
Sbjct: 1098 CLHHRDLPCVLRASTP 1113


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 654 YYLLQPRAAPAVIHLDFGRLLTNYY 728
           Y+L      P   H++  RL+ NYY
Sbjct: 370 YFLDYNYTIPKEKHVEVARLIRNYY 394


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 654 YYLLQPRAAPAVIHLDFGRLLTNYY 728
           Y+L      P   H++  RL+ NYY
Sbjct: 370 YFLDYNYTIPKEKHVEVARLIRNYY 394


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 727 TLSIPTMTS*KRTVLNLYINKKPVI*FICT 816
           TL+IP   +  + ++N Y  ++P +  +C+
Sbjct: 53  TLTIPVPQAANKGMINQYGGEQPTLRLLCS 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,338
Number of Sequences: 438
Number of extensions: 5600
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)