Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6272
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14...    31   1.4  
12_01_0650 + 5500662-5501206,5502485-5502563,5503100-5503308,550...    29   4.3  
07_03_1719 - 28987426-28987851,28987954-28988231,28988329-28988530     29   4.3  
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739...    29   5.7  

>11_01_0021 -
           143576-143932,144434-144667,144988-145066,145138-145253,
           145717-145861,146048-146465,147206-147869
          Length = 670

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 186 ALHNQLQNHMILHLIA*CVQKSKIHYIIMSNSLPLCKKK 302
           A HN L NH++ H     +  +K H+    ++LP  K K
Sbjct: 87  AFHNLLDNHLLHHFHTLLIHANKPHFDAFLSNLPFAKLK 125


>12_01_0650 +
           5500662-5501206,5502485-5502563,5503100-5503308,
           5504396-5505146
          Length = 527

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -1

Query: 415 LVPEAKAELKIVQNFILKEVFNVLSILNLSFVGIENFHFFLHSGSEFDIIM*CIFDFCT 239
           L+P+   E K  Q+ + +E    LS  +   + + NFHF  + G E+ ++   I+D  T
Sbjct: 385 LIPQTTGEAKRTQD-VGEEYLIQLSRKSFVDLKLRNFHFGRNEGHEYYVMHDLIYDLAT 442


>07_03_1719 - 28987426-28987851,28987954-28988231,28988329-28988530
          Length = 301

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 635 ITLYLTKNKLLKSFSCLIIHDLRGSGCD 718
           +T YLT+    +SFSC++I D+  + C+
Sbjct: 35  VTHYLTRKAQDRSFSCVVIADVNLNNCE 62


>07_03_1567 -
           27772815-27773302,27773471-27773561,27773641-27773988,
           27774929-27775110,27775191-27775368,27775453-27775605,
           27775993-27776232,27776369-27776449,27776485-27776730,
           27777151-27777240,27777536-27777778,27778365-27778529,
           27779017-27779080,27779162-27779286,27779383-27779476,
           27779647-27779714,27779798-27779989,27780618-27780752,
           27780847-27780934,27781014-27781107,27781484-27781547,
           27781657-27781708,27781911-27782014,27782099-27782158,
           27782687-27782770,27782892-27783125,27783442-27783864,
           27784675-27784736,27784867-27785521
          Length = 1700

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
 Frame = +3

Query: 165 FNKSQMSALHNQLQNHMILHLIA*CVQKS---KIHYIIMSNSLPLCKKKWKF 311
           FN+++++ LH +L+ H++  +I   V+KS   KI  I+  +  PL K+ +K+
Sbjct: 799 FNETELANLHKELRPHILRRVIK-DVEKSLPPKIERILRVDMSPLQKQYYKW 849


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,398,949
Number of Sequences: 37544
Number of extensions: 338107
Number of successful extensions: 465
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)