Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6272
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   4.3  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   7.6  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   7.6  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   7.6  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   7.6  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -2

Query: 753 KNCYHNFYVIPVSQPLPLKSCIIRHENDFSNLFLVK*SVIQ*FHNLLFY 607
           +N YH F ++P    L   +  +  EN      L+  + +  +++LL Y
Sbjct: 299 QNSYHEFQILPERGELGHCTASVMDENGLQFFNLIDQNAVGCWNSLLPY 347


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 118 QLIKNNNVNY*VPHTNLTSHKCQHYIISFK 207
           ++I +NN NY   + N  S K  + II+ +
Sbjct: 302 KIISSNNYNYKNYNNNYNSKKLYYNIINIE 331


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 118 QLIKNNNVNY*VPHTNLTSHKCQHYIISFK 207
           ++I +NN NY   + N  S K  + II+ +
Sbjct: 313 KIISSNNYNYKNYNNNYNSKKLYYNIINIE 342


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -2

Query: 798 LVLYDEIKKVL 766
           LVLYDEIK +L
Sbjct: 290 LVLYDEIKNLL 300


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -2

Query: 798 LVLYDEIKKVL 766
           LVLYDEIK +L
Sbjct: 290 LVLYDEIKNLL 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,972
Number of Sequences: 438
Number of extensions: 4501
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)