Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6269
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    27   1.7  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   3.9  
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    25   6.8  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    25   9.0  

>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 321 LFSKI-VRDRPSFSTFPTPAPEGPDLTDIVSLF 416
           +FSK  V  RPS+S+     PEGP + ++  +F
Sbjct: 137 IFSKAGVLTRPSYSSVCQLGPEGPSVENVQGIF 169


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 506 YTDG-LSNLVHETDFNDDDSIPDNKSDIF 423
           Y DG +S+  + TDF DD+   + K + F
Sbjct: 540 YDDGAMSSTSYSTDFTDDEEETNTKDEFF 568


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 172 AKSLDRIHPSTTYNDLQ 222
           A+S+D  HPST Y+D +
Sbjct: 199 AQSIDVFHPSTEYSDYE 215


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 521 DDVTAYTDGLSNLVHETDFNDDDSIPDN 438
           D+  +Y D +SN+V+E +    D IP N
Sbjct: 370 DEDLSYMDDMSNVVNEDENLIIDEIPSN 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,638,189
Number of Sequences: 5004
Number of extensions: 27739
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)