Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6267
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.43 
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    26   5.2  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   6.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   6.9  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   6.9  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   9.1  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    25   9.1  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   9.1  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.1  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = -2

Query: 475 CQNIVYR---FSGVDNVNVCRYRHW-FSTVCRKGDKISGSRLSVCRYRRANDHICRLAGR 308
           CQN  Y     S V + NV  +  + FS +C   D  SGS L  C     +  +C+  G 
Sbjct: 52  CQNTTYDAIILSSVIDFNVDGWPVYDFSNLCSDSDTFSGSELKKCPQIETDIQVCQENGI 111

Query: 307 QELRS 293
           + L S
Sbjct: 112 KVLLS 116


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 5   SFPCSQRPRGVENENLQNHETLRFTSNI 88
           +F C+Q+P   ENEN+  + +  F   I
Sbjct: 42  AFSCTQKPSVSENENVGKYASSSFAERI 69


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 335 VSATIPTNAQPGTRDLITFTAYGTEPVSISAHVYVINTG 451
           + A I  +A+PG R ++  T      +++    YV++TG
Sbjct: 746 LQAKIFDSAEPGVRKVVVATNIAETSLTVHGISYVVDTG 784


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 56   NHETLRFTSNITTSRIVSQVMNQRGALLTAVQ 151
            ++ T R TSN  TSR VS   N   +L   VQ
Sbjct: 3881 SNSTFRNTSNTMTSRFVSNDFNSTISLQPVVQ 3912


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -2

Query: 61  VILEIFVFDPSRSLTARE 8
           ++ ++FV+DP R +TA+E
Sbjct: 658 LLKKVFVYDPKRRITAKE 675


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/50 (20%), Positives = 25/50 (50%)
 Frame = -3

Query: 381 RSLVPG*AFVGIVALTITFAVWPDVRSCAAGLIPVRSLSSPTAPNVNLTD 232
           +++ PG   +G +A   T  +   + +C  G +P+ ++S   +  ++  D
Sbjct: 104 KNITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSID 153


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 366 REPEILSPLRHTVLNQCRYRHTF 434
           +EPE+L PL  TV     +RH +
Sbjct: 122 KEPELLDPLIPTVRQCLEHRHAY 144


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 38   ENENLQNHETLRFTSNITTSRIVSQVMNQRGALLTAVQIGLRTTL 172
            +NE L++H  L++T+N+  + I          LL A  IGL T L
Sbjct: 1022 KNELLRHH-ALKYTANLLLNPIEKVRYQAADTLLYAKSIGLLTFL 1065


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 311 SGQTANVIVSATIPTNAQPGTRDLITFTAYGTEPVSISAHVYVINTGETV 460
           S  + N I S  +  ++ P T      +   T PVS++A V   NTG  +
Sbjct: 54  SNTSTNQISSLKVDVSSPPSTAPGSAGSTPKTTPVSLNAGVPPSNTGANI 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,353
Number of Sequences: 5004
Number of extensions: 54041
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)