Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6267
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1057 - 10899871-10899961,10900255-10900411,10901420-109014...    28   7.1  
03_01_0436 + 3384526-3385236,3387857-3388720                           28   7.1  
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485...    27   9.4  

>12_01_1057 -
           10899871-10899961,10900255-10900411,10901420-10901498,
           10901618-10901707,10903232-10903486,10903674-10903689,
           10903907-10903940,10905653-10905884
          Length = 317

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 200 LHFEVTNYREQSVRFTFGAVGELRLLTGISPAA-QLLTSGQTANVIVSATIPTNAQPGTR 376
           L+ E+T    +S++FT   + E   LT I+P   +  T      V V  T+   A+P   
Sbjct: 192 LNSEITWEEYKSMKFTSHVIHEALRLTNIAPVMFRKATEDVHIKVEVCTTVQDTAEPAGG 251

Query: 377 DLITFTAYG 403
               F A+G
Sbjct: 252 ASKDFMAFG 260


>03_01_0436 + 3384526-3385236,3387857-3388720
          Length = 524

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 224 REQSVRFTFGAVGELRLLTGISPA 295
           RE+S    FGAV EL   TG+ PA
Sbjct: 157 REESEAVVFGAVDELLAKTGVPPA 180


>07_01_0646 +
           4853546-4853623,4853732-4855357,4855467-4855751,
           4856131-4856277
          Length = 711

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 424 GTRLRYQHRRNGKRCFGTG-SQSRVPRIVHRKDWSGLRPVC 543
           GT L Y H+R  +RCF  G ++             GL+P C
Sbjct: 421 GTGLNYFHKRFPERCFDVGIAEQHAVTFAAGLAAEGLKPFC 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,439,271
Number of Sequences: 37544
Number of extensions: 375906
Number of successful extensions: 919
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)