Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6267
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040659-3|AAK39392.1|  919|Caenorhabditis elegans Hypothetical ...    32   0.30 
AF040659-2|AAK39393.1|  873|Caenorhabditis elegans Hypothetical ...    32   0.30 
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine r...    28   4.9  
Z70681-5|CAE17703.1|  231|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z70208-11|CAA94144.1|  598|Caenorhabditis elegans Hypothetical p...    27   8.5  
U41031-1|AAA82618.2|  562|Caenorhabditis elegans Abnormal cell l...    27   8.5  
AF133217-1|AAD24877.1|  583|Caenorhabditis elegans tyrosine kina...    27   8.5  

>AF040659-3|AAK39392.1|  919|Caenorhabditis elegans Hypothetical
           protein ZK484.4a protein.
          Length = 919

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 23/70 (32%), Positives = 35/70 (50%)
 Frame = +3

Query: 249 SERSVNLGF*RESVRLRNS*RPARRQM*SLARRYRQTLNREPEILSPLRHTVLNQCRYRH 428
           +E S +LG        R S   A  Q  SL RR  + + +E  +LSP R T  ++  Y+H
Sbjct: 375 NETSADLGVGGVERARRTSTEAAAPQRRSLKRRNIEDVPKE--LLSPARTTRTSRSDYKH 432

Query: 429 TFTLSTPEKR 458
            F   TP+++
Sbjct: 433 FFVEDTPDEK 442


>AF040659-2|AAK39393.1|  873|Caenorhabditis elegans Hypothetical
           protein ZK484.4b protein.
          Length = 873

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 23/70 (32%), Positives = 35/70 (50%)
 Frame = +3

Query: 249 SERSVNLGF*RESVRLRNS*RPARRQM*SLARRYRQTLNREPEILSPLRHTVLNQCRYRH 428
           +E S +LG        R S   A  Q  SL RR  + + +E  +LSP R T  ++  Y+H
Sbjct: 375 NETSADLGVGGVERARRTSTEAAAPQRRSLKRRNIEDVPKE--LLSPARTTRTSRSDYKH 432

Query: 429 TFTLSTPEKR 458
            F   TP+++
Sbjct: 433 FFVEDTPDEK 442


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
            ZK1067.2 protein.
          Length = 2219

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 354  QTLNREPEILSPLRHTVLNQCRYRHTFTLSTPEKR*TMFWHRKSVTCSKD 503
            + L + P+ LSP +HT L  C+   +  L T  +R T +  +   TC  D
Sbjct: 1727 ECLTKVPKTLSPCKHTELVLCKQAPSTKLCT--RRCTSYLEKCGHTCEND 1774


>AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine
           receptor, class u protein28 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 387 VIRSLVPG*AFVGIVALTITFAVWPDVRSCAAGLIP 280
           +++S +P   F+ I  +  TF +WP V  C A L P
Sbjct: 156 ILKSALP---FISIYPIFFTFFLWPAVGYCTAALGP 188


>Z70681-5|CAE17703.1|  231|Caenorhabditis elegans Hypothetical
           protein C30F2.5 protein.
          Length = 231

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 535 GAVLTSPSYARSLEHVTDFRC 473
           G ++TSPS  RS +H   FRC
Sbjct: 118 GGIMTSPSLFRSTDHHDLFRC 138


>Z70208-11|CAA94144.1|  598|Caenorhabditis elegans Hypothetical
           protein F54B11.11 protein.
          Length = 598

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
 Frame = +2

Query: 191 NLQLHFEVTNYREQSVRFTFGAVGELRLLTGISPAAQLLTSGQT-----ANVIVSA---- 343
           N  +   +T Y E  +    G   +  L T  S   + LTS  T     AN++ +     
Sbjct: 451 NFTMRGYITLYYE--ITAASGTTTQPILSTMTSSTTKTLTSTTTITTTKANILTTTATTT 508

Query: 344 TIPTNAQPGTRDLITFTAYGTEPVSISAHVYVINTGETVNDVLAPEVSHV 493
           T P  + P T   IT   + T PV+ S  +Y  NTG T++  +   ++ V
Sbjct: 509 TPPVTSAPATT-FITPVPF-TPPVTNSTTIYSSNTGSTLSTTIGLPITQV 556


>U41031-1|AAA82618.2|  562|Caenorhabditis elegans Abnormal cell
           lineage protein 18 protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 496 EHVTDFRCQNIVYRFSGVDNVNVCRYRHWFSTVCRKGDKISGSR 365
           E VTDF    + YR  G  N+        F T+CR GDK  G++
Sbjct: 352 ETVTDFPL--VCYRHQGFGNLKK------FLTICRHGDKTKGAQ 387


>AF133217-1|AAD24877.1|  583|Caenorhabditis elegans tyrosine kinase
           receptor-relatedprotein precursor RYK protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 496 EHVTDFRCQNIVYRFSGVDNVNVCRYRHWFSTVCRKGDKISGSR 365
           E VTDF    + YR  G  N+        F T+CR GDK  G++
Sbjct: 373 ETVTDFPL--VCYRHQGFGNLKK------FLTICRHGDKTKGAQ 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,668,530
Number of Sequences: 27780
Number of extensions: 315385
Number of successful extensions: 801
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)