Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6266
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   1.8  
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    27   2.3  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   4.1  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   7.2  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   9.5  

>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 448 GTNFSNEIRTQQMFTIDFHGEGITSCNKNETRKIIICVISGSRTSC-ESARGGYHRPAYF 624
           G+ F N I +   F+   HG+GI     +++R ++  +   S  SC E  + G +R  ++
Sbjct: 228 GSVFDNFIPS--FFSFGTHGDGIKQIAVDDSRSLLYVLRETSSVSCYELTKNGVNRCVFY 285


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 19  FSTQTHWLFSQLGILIYILVFLVISIPFI 105
           F+ Q+ W FS+LG  +Y+ ++ +I  P I
Sbjct: 165 FTFQSKWDFSRLGGFLYVSLWSLILTPLI 193


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 563 ITQIIILRVSFLLHDVIPSPWKSIVNI 483
           +T  I+L + F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 73   LVFLVISIPFITQYSFELSF 132
            L+  ++S+PF+T Y FEL F
Sbjct: 974  LMMYILSVPFLTNY-FELKF 992


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 150 HFLNIACHLPNMNIDINYTISINVKITL 233
           H +N  C L N+ +    +I +N+ +TL
Sbjct: 105 HDVNHLCRLANLEMQKELSIEVNMNVTL 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,561
Number of Sequences: 5004
Number of extensions: 49767
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)