Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6265
         (488 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051710-1|AAK93134.1|  745|Drosophila melanogaster LD24835p pro...    28   7.9  
AF221547-1|AAF34654.1|  742|Drosophila melanogaster RhoGTPase pr...    28   7.9  
AF217287-1|AAF44065.1|  745|Drosophila melanogaster G protein Rh...    28   7.9  
AE014296-3345|AAF51585.3|  745|Drosophila melanogaster CG5701-PA...    28   7.9  

>AY051710-1|AAK93134.1|  745|Drosophila melanogaster LD24835p
           protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 118 HELCNYNVGYRCINNRLFCCIGILEYTSYNVDNSNT*SERKIWH--WHLEFY 267
           H+L  + + Y C+N  L C   +    + + DN     E + W   W+L+ Y
Sbjct: 610 HQLAEWCMSYLCVNYNLICKFSLKGLKALHQDNQEYLREHR-WPPVWYLKDY 660


>AF221547-1|AAF34654.1|  742|Drosophila melanogaster RhoGTPase
           protein.
          Length = 742

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 118 HELCNYNVGYRCINNRLFCCIGILEYTSYNVDNSNT*SERKIWH--WHLEFY 267
           H+L  + + Y C+N  L C   +    + + DN     E + W   W+L+ Y
Sbjct: 610 HQLAEWCMSYLCVNYNLICKFSLKGLKALHQDNQEYLREHR-WPPVWYLKDY 660


>AF217287-1|AAF44065.1|  745|Drosophila melanogaster G protein
           RhoBTB protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 118 HELCNYNVGYRCINNRLFCCIGILEYTSYNVDNSNT*SERKIWH--WHLEFY 267
           H+L  + + Y C+N  L C   +    + + DN     E + W   W+L+ Y
Sbjct: 610 HQLAEWCMSYLCVNYNLICKFSLKGLKALHQDNQEYLREHR-WPPVWYLKDY 660


>AE014296-3345|AAF51585.3|  745|Drosophila melanogaster CG5701-PA
           protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 118 HELCNYNVGYRCINNRLFCCIGILEYTSYNVDNSNT*SERKIWH--WHLEFY 267
           H+L  + + Y C+N  L C   +    + + DN     E + W   W+L+ Y
Sbjct: 610 HQLAEWCMSYLCVNYNLICKFSLKGLKALHQDNQEYLREHR-WPPVWYLKDY 660


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,369,651
Number of Sequences: 53049
Number of extensions: 461147
Number of successful extensions: 854
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1726192251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)