Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6263
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 284 9e-78
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 194 2e-50
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 167 1e-42
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 142 5e-35
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 140 2e-34
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 120 2e-28
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 113 2e-26
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 112 7e-26
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 107 1e-24
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 107 2e-24
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 101 2e-22
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 99 4e-22
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 99 4e-22
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 98 1e-21
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 96 5e-21
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 94 2e-20
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 93 3e-20
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 92 1e-19
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 89 7e-19
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 87 2e-18
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 82 8e-17
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 68 2e-12
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 65 1e-11
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 37 0.003
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 37 0.003
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.26
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 30 0.34
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 29 0.60
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 2.4
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 27 3.2
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 27 3.2
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 4.2
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 5.6
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 5.6
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 7.4
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 26 7.4
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 9.7
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 284 bits (697), Expect = 9e-78
Identities = 133/218 (61%), Positives = 162/218 (74%)
Frame = +3
Query: 81 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 260
N+ + DW + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 261 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 440
FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHIN Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ 187
Query: 441 PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE 620
P + GDGPI LVLAPTRELA QIQQ FG +S +RNTCV+GG P+ Q RDL RGVE
Sbjct: 188 PLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVE 247
Query: 621 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 734
I IATPGRL+D L+ TNL+R TYLVLDEADRMLDMG
Sbjct: 248 ICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMG 285
Score = 54.4 bits (125), Expect = 2e-08
Identities = 22/26 (84%), Positives = 26/26 (100%)
Frame = +1
Query: 733 GFEPQIRKIIEQIRPDRQTLMWSATW 810
GFEPQIRKI++QIRPDRQT+M+SATW
Sbjct: 285 GFEPQIRKIVDQIRPDRQTVMFSATW 310
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 194 bits (472), Expect = 2e-50
Identities = 93/217 (42%), Positives = 136/217 (62%), Gaps = 4/217 (1%)
Frame = +3
Query: 96 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPD 272
D ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 273 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 452
+ ++GY++PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLK 487
Query: 453 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIA 632
G+GPIA+++ PTRELA QI + F +R C +GGAP ++Q DL+RG EIV+
Sbjct: 488 TGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVC 547
Query: 633 TPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMG 734
TPGR+ID L TNL RCTYLVLDEADRM D+G
Sbjct: 548 TPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLG 584
Score = 42.7 bits (96), Expect = 6e-05
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = +1
Query: 733 GFEPQIRKIIEQIRPDRQTLMWSATW 810
GFEPQ+ +II IRPDRQT+++SAT+
Sbjct: 584 GFEPQVMRIINNIRPDRQTVLFSATF 609
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 167 bits (407), Expect = 1e-42
Identities = 82/184 (44%), Positives = 119/184 (64%), Gaps = 3/184 (1%)
Frame = +3
Query: 192 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 371
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 372 VAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHT 542
+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ F
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEP 351
Query: 543 SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRM 722
R V GG EQ+ + +G IV+ATPGRL+D LE+ L +CTY+V+DEADRM
Sbjct: 352 LGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRM 411
Query: 723 LDMG 734
LDMG
Sbjct: 412 LDMG 415
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 142 bits (344), Expect = 5e-35
Identities = 79/204 (38%), Positives = 123/204 (60%), Gaps = 3/204 (1%)
Frame = +3
Query: 183 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 353
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 354 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 533
G+++VG+A+TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q +
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSL 259
Query: 534 GHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 713
+ ++ V+GGAPK EQAR + ++I TPGRL+D + G+ + + YLVLDEA
Sbjct: 260 IQGTNLKAVVVYGGAPKSEQAR-AAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEA 318
Query: 714 DRMLDMGI*TTNQKNH*ANTPRQT 785
DRMLD G + +N ++TP T
Sbjct: 319 DRMLDTGF-EQDIRNIISHTPDPT 341
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
Frame = +1
Query: 733 GFEPQIRKIIEQIRPD------RQTLMWSATW 810
GFE IR II PD RQT+ +SATW
Sbjct: 325 GFEQDIRNIISHT-PDPTRNGSRQTVFFSATW 355
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 140 bits (340), Expect = 2e-34
Identities = 76/189 (40%), Positives = 112/189 (59%), Gaps = 13/189 (6%)
Frame = +3
Query: 207 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 386
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 387 SGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQVAA 527
SGKT ++ P + + + P P+ + G P L+LAPTREL QI + +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 528 DFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLD 707
F + S+VR V+GGA R Q R +++G +++ ATPGRL+D +++G +L +LVLD
Sbjct: 277 KFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLD 336
Query: 708 EADRMLDMG 734
EADRMLDMG
Sbjct: 337 EADRMLDMG 345
Score = 31.1 bits (67), Expect = 0.20
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
Frame = +1
Query: 733 GFEPQIRKIIEQIR----PDRQTLMWSATW 810
GFEPQIR I+E +RQTLM+SAT+
Sbjct: 345 GFEPQIRHIVEGADMTSVEERQTLMFSATF 374
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 120 bits (290), Expect = 2e-28
Identities = 68/164 (41%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Frame = +3
Query: 249 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 428
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 429 I-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 605
+ NN P A+VLAPTRELA QI + G + VR+ + GG QA L
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVAL 161
Query: 606 ERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDM 731
+ +++ TPGRL+D LE KG +L+ YL++DEADR+LDM
Sbjct: 162 SKKPHVLVCTPGRLMDHLENTKG-FSLKNLKYLIMDEADRLLDM 204
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 113 bits (273), Expect = 2e-26
Identities = 69/190 (36%), Positives = 114/190 (60%), Gaps = 4/190 (2%)
Frame = +3
Query: 177 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 356
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 357 KNLVGVAQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 530
++++G A+TGSGKTLA+++P I ++ P R G G ++++PTRELA QI VA +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
Query: 531 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVL 704
+ V GGA +R +A L +GV +++ATPGRL+D L+ KG + LV+
Sbjct: 184 LLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFV-FRNLRSLVI 242
Query: 705 DEADRMLDMG 734
DEADR+L++G
Sbjct: 243 DEADRILEIG 252
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 112 bits (269), Expect = 7e-26
Identities = 58/162 (35%), Positives = 90/162 (55%)
Frame = +3
Query: 249 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 428
F+ + + + G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 429 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 608
+ + AL+L+P RELA Q +V DF + +R+ + GG EQ L
Sbjct: 131 LKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLS 187
Query: 609 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 734
+IV+ATPGR + + L Y+V DEADR+ +MG
Sbjct: 188 GKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMG 229
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 733 GFEPQIRKIIEQIRPDRQTLMWSAT 807
GF Q+ +I+ + RQTL++SAT
Sbjct: 229 GFAAQLTEILHALPTSRQTLLFSAT 253
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 107 bits (258), Expect = 1e-24
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 1/163 (0%)
Frame = +3
Query: 249 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 428
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 429 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 608
+ +P ++ L+L PTRELA Q VA + + GG + Q ++L
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELR 378
Query: 609 RGVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMG 734
+ +IVIATPGR ID + ++ +V+DEADRML+ G
Sbjct: 379 KRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDG 421
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 733 GFEPQIRKIIEQIRPDRQTLMWSAT 807
GF ++ +II+ RQT+++SAT
Sbjct: 421 GFADELNEIIQACPKSRQTMLFSAT 445
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 107 bits (256), Expect = 2e-24
Identities = 55/159 (34%), Positives = 88/159 (55%)
Frame = +3
Query: 249 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 428
FE+ + G+ G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 429 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 608
++ + + L+L PTRELA Q QV G V+ GG R+ L
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLN 160
Query: 609 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML 725
V IV+ TPGR++D KG + CT V+DEAD++L
Sbjct: 161 DTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLL 199
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 101 bits (241), Expect = 2e-22
Identities = 60/163 (36%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Frame = +3
Query: 249 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 428
F + ++ +K + EPT IQ + G+N +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 429 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 608
+ P G AL+L PTRELA QI + A G +++ + GG Q+ DL
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLS 123
Query: 609 RGVEIVIATPGRLIDFL----EKGTTNLQRCTYLVLDEADRML 725
+ +V+ATPGRL D + E+ L+R +LV+DEADR+L
Sbjct: 124 KRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLL 166
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 99 bits (238), Expect = 4e-22
Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 3/198 (1%)
Frame = +3
Query: 219 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 398
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 399 LAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQVAADFGH--TSYVRNTCVF 569
AY++P + + Q I G AL+L PTRELAQQ+ V + ++R V
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVA 125
Query: 570 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGI*TTN 749
+ Q L +IVIATP R + + G L + +LV+DEAD ML G +
Sbjct: 126 TNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGY-NED 184
Query: 750 QKNH*ANTPRQTDFDVVS 803
K + PR T ++S
Sbjct: 185 MKTLSRSLPRGTQSFLMS 202
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 99 bits (238), Expect = 4e-22
Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 1/189 (0%)
Frame = +3
Query: 183 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 362
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 363 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 542
++G A+TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRL 137
Query: 543 SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADR 719
+ GG +E+ L R + I++ TPGRL+ +++ + L+LDEADR
Sbjct: 138 HSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADR 196
Query: 720 MLDMGI*TT 746
+LDMG TT
Sbjct: 197 ILDMGFRTT 205
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 98.3 bits (234), Expect = 1e-21
Identities = 62/161 (38%), Positives = 89/161 (55%), Gaps = 8/161 (4%)
Frame = +3
Query: 297 MGYKEPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQPPI--RRGDG 464
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 465 PIALVLAPTRELAQQIQQVAADFGH---TSYVRNTCVFGGAPKREQARDLERGVEIVIAT 635
A+++APTREL QQI VA + + ++ + V GG K+ + + +GV I+I T
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGT 276
Query: 636 PGRLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGI*TTNQK 755
PGRL D LE ++ + ++VLDE DR++DMG T K
Sbjct: 277 PGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTK 317
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 96.3 bits (229), Expect = 5e-21
Identities = 64/178 (35%), Positives = 91/178 (51%), Gaps = 10/178 (5%)
Frame = +3
Query: 249 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 428
F+ N +++ V G+K+ TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 429 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF---------GHTSYVRNTCVFG-GA 578
+ + G G AL++APTRELA QI V + G V + + G G
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 579 PKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGI*TTNQ 752
+ A E+ +VI TPGRL + L + + L+LDEAD ++DMG T Q
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQRTLQ 176
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 93.9 bits (223), Expect = 2e-20
Identities = 57/184 (30%), Positives = 93/184 (50%)
Frame = +3
Query: 183 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 362
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 363 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 542
++ AQ+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDH 115
Query: 543 SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRM 722
V+ GG + L+ G +V TPGR+ D + + + L+LDEAD +
Sbjct: 116 MNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADEL 175
Query: 723 LDMG 734
L+ G
Sbjct: 176 LNQG 179
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 93.5 bits (222), Expect = 3e-20
Identities = 53/165 (32%), Positives = 86/165 (52%)
Frame = +3
Query: 240 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 419
I F++ N + +G+ G++ P+ IQ + + ++++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 420 IVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 599
+ I+ +++ AL+LAPTRELAQQIQ+V G V GG R+
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMA 132
Query: 600 DLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 734
L+ GV +V+ TPGR+ D +++ VLDEAD ML G
Sbjct: 133 ALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRG 177
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 91.9 bits (218), Expect = 1e-19
Identities = 59/146 (40%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Frame = +3
Query: 300 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 473
G+ +P PIQ+ P A G +++G A TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 474 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 653
LV+APTRELA QI Q + +R + GG ++Q R L + +V+ATPGRL
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWS 255
Query: 654 FLEKG--TTNLQRCTYLVLDEADRML 725
+ + T N ++ LVLDEADR+L
Sbjct: 256 VINENNLTGNFKKIKCLVLDEADRLL 281
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 89.0 bits (211), Expect = 7e-19
Identities = 53/165 (32%), Positives = 92/165 (55%), Gaps = 2/165 (1%)
Frame = +3
Query: 240 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYIL 413
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++G +Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 414 PAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 593
+ ++ P P A+ LAP+RELA+QI V + G + V+ FG K
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FG--IKDSV 223
Query: 594 ARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 728
+ + +IVI TPG ++D +++ + + VLDEAD MLD
Sbjct: 224 PKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 268
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 87.4 bits (207), Expect = 2e-18
Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 3/193 (1%)
Frame = +3
Query: 216 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSG 392
S ++ P + E A+ + + G+++ TP+Q + + + +N V A+TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 393 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 572
KTLA++L A + P +++L+PTRELA QI + A + + +R + G
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIG 148
Query: 573 GAPKREQARDLERG-VEIVIATPGRLIDFLEKGTTNLQRCT-YLVLDEADRMLDMGI*TT 746
G K + + RG ++IATPGRL D L+ T +LDEADR++DMG +
Sbjct: 149 GNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAES 208
Query: 747 NQKNH*ANTPRQT 785
H A T +T
Sbjct: 209 ILNIHEAVTTTKT 221
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 82.2 bits (194), Expect = 8e-17
Identities = 62/215 (28%), Positives = 110/215 (51%), Gaps = 4/215 (1%)
Frame = +3
Query: 102 DSVSLQPFNKNFYD--PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 275
D++ L N F + P P++ ++ +++ K + V+G +NP+ EE FP+
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEG 55
Query: 276 VQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 452
+ + +K E T IQ P S ++L+ A TGSGKT+AY+ P + + P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP-- 113
Query: 453 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK-REQARDLERGVEIVI 629
G A+++APTREL +QI + A + ++ + K +E+A L ++ I
Sbjct: 114 --GGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCI 171
Query: 630 ATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 734
TP RL+ ++ G + ++ + V+DEADR+ + G
Sbjct: 172 GTPMRLVQAIQTG-LSFEKVEFFVMDEADRLFEPG 205
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 67.7 bits (158), Expect = 2e-12
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 5/154 (3%)
Frame = +3
Query: 282 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 461
+ + G++ P+ +Q P ++ G +++ A++G GKT ++L + I P+ D
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117
Query: 462 GPIA-LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKR---EQARDLERGVEIV 626
G ++ LVL TRELA QI+ A F + VR +GG + E +D + IV
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 627 IATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 728
+ATPGRL + + + + VLDE D++L+
Sbjct: 178 VATPGRLNALVREKILKVNSVKHFVLDECDKLLE 211
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 64.9 bits (151), Expect = 1e-11
Identities = 42/138 (30%), Positives = 76/138 (55%), Gaps = 8/138 (5%)
Frame = +3
Query: 339 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 512
P+ G ++ A TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
Query: 513 QQVAADFGHTSYVRNTCVFGGAPKREQARDL-----ERGVEIVIATPGRLIDFLEKGTT- 674
+ + + ++ G R + L E ++++++TPGRL+D + +
Sbjct: 222 AKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESF 281
Query: 675 NLQRCTYLVLDEADRMLD 728
+LQ Y+V+DEADR+LD
Sbjct: 282 SLQHLRYMVIDEADRLLD 299
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 360 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 512
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 360 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 512
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.7 bits (66), Expect = 0.26
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +3
Query: 348 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 506
+SGK++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 30.3 bits (65), Expect = 0.34
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = +3
Query: 462 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 641
G + L TR +++ Q DF G P R L++G+E VI TP
Sbjct: 93 GRVERRLVCTRSISRHSNQKLLDFCVECKKHKIKCVGNFPC---GRCLKKGLECVIETPP 149
Query: 642 RLIDFLEKGTTNLQRCTYL 698
RL+ ++ + NLQR +++
Sbjct: 150 RLLMNKDEISLNLQRLSHM 168
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 29.5 bits (63), Expect = 0.60
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Frame = +3
Query: 357 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 536
+N++ TG GKT + A+V +N +R + +APT+ L Q Q+ A +
Sbjct: 87 ENVLVALPTGLGKTF---IAAVVMMNY---LRWFPKSYIVFMAPTKPLVTQ--QMEACYK 138
Query: 537 HTSYVRN-TCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 713
T ++ T G + + TP +++ ++ G + R + LV+DEA
Sbjct: 139 ITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDIKHGICDRTRISCLVIDEA 198
Query: 714 DR 719
R
Sbjct: 199 HR 200
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 297 MGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 437
+ Y+ IQ+ +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 27.1 bits (57), Expect = 3.2
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = +3
Query: 207 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 386
V V VE PI Y GV +GY + P G P+ ++GK + V
Sbjct: 253 VCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNGCPVIINGKRVPTV---- 308
Query: 387 SGKTLAYILPAIVHINNQPPIRRGD 461
GK +L + + + P ++RGD
Sbjct: 309 -GKVCMDML--AIDVTDVPDVKRGD 330
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 465 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 608
PI ++ +P E+ ++V D Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 311 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 186
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 171 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 302
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 171 PYEVEEYRNKHEVTVS 218
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 146 WIIKVFVERLE*NRIPIWASHVLPSREF 63
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 7.4
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = +3
Query: 522 AADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR-LIDFL---EKGTTNLQRC 689
A FG S + C G KR RD+ G + ++ PG +D L K +L
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPGTPYLDILAMASKLADDLPIA 274
Query: 690 TYLVLDE 710
TY V E
Sbjct: 275 TYQVSGE 281
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 300 PLSLHLVAHNQENL--LLQSIE 241
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,576,175
Number of Sequences: 5004
Number of extensions: 80513
Number of successful extensions: 294
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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