Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6262
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      33   0.029
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    29   0.48 
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    27   1.9  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    27   3.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.4  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    26   4.4  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   7.8  

>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 24/82 (29%), Positives = 35/82 (42%)
 Frame = +1

Query: 355 DNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQTCQTSETVVQGR 534
           D GE     F  EN  P ++   P+ + TT P QTP   S  +  P+      + V Q  
Sbjct: 78  DGGE-AFFVFATENAVPRELQTSPIVSPTTSPKQTP---SINVTEPQDL--ELDKVSQDH 131

Query: 535 DKICKGTLIFSDEFEKNSLKDL 600
           +K    T +  D +E    +DL
Sbjct: 132 EKDQSNTYLMEDGYEFPLTRDL 153


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 17/46 (36%), Positives = 19/46 (41%)
 Frame = +1

Query: 424 PVATSTTGPLQTPQQASTPIVRPEQTCQTSETVVQGRDKICKGTLI 561
           PV  S T P   P  +STP+       QT  T V    K  K  LI
Sbjct: 580 PVTASETSPPHAPAVSSTPVTSAPPVSQTKVTKVSVPKKTSKKFLI 625


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 416 ATSTGFPFSLTNSVTVHSPLSCLYPRPSLITYVQK 312
           ATS   PFSL+  V    P S ++ +PS     Q+
Sbjct: 152 ATSANNPFSLSTDVNPSKPSSNVFSKPSFAAKAQQ 186


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 388 NENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQTCQTSET 519
           N   NP + A  P  +S +  L T Q A +PI+    T   + T
Sbjct: 142 NVQSNPNNTAPFPSYSSNSLQLPTNQTADSPIINDHSTANVTST 185


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +1

Query: 370 TVTEFVNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQTCQTSETVV 525
           T T   + N +P+   +    TST+ P       STPI        TS T +
Sbjct: 210 TSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSI 261



 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
 Frame = +1

Query: 370 TVTEFVNENGNPVDVANPPVATST----TGPLQTPQQASTPIVRPEQTCQTS 513
           T T   + N NP+   +    TST    TG   +     TP V P  T  TS
Sbjct: 153 TSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTS 204


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 415 ANPPVATSTTGPLQTPQQASTPIVRPEQTCQT 510
           A+  ++ ++T P +    AST IVRP    QT
Sbjct: 257 ASGSISKNSTSPSKVKVNASTKIVRPVSAAQT 288


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 391 ENGNPVDVANPPVATSTTGPLQTPQ-QASTPIVRPEQTCQTS 513
           EN  PV   +PPV   T  P+QT   Q S  +  P  +  ++
Sbjct: 439 ENKPPVAQQSPPVLLPTLPPIQTTTIQTSREVAPPPSSINSN 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.136    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,316
Number of Sequences: 5004
Number of extensions: 64839
Number of successful extensions: 222
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)