Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6261
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 29 0.77
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.77
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 29 1.0
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 28 1.3
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.3
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 28 1.8
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.1
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 27 3.1
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 26 7.2
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 25 9.5
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 25 9.5
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 9.5
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 29.1 bits (62), Expect = 0.77
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 594 GNNQNQLQVQTGQYGH-NTGQNYQTSQFNGQSYQPGQFSGQNTQFIGSGSGLGSAQ 758
GNN N +G Y + N+G N Q Q + S Q G + F+ S SG + Q
Sbjct: 561 GNNNNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQ-----GLASSFLNSSSGNSNKQ 611
>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 29.1 bits (62), Expect = 0.77
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 94 RKK*SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPP--TKPTRVSRNRSSKA 267
R+K + S + K + P K ++KRK E+S LH P + + +N++ K
Sbjct: 125 RRKQELVSKKAEASRKMEVKAPAKESKKRKVNELSQDVISLHSPKESNARKTKKNKNKKK 184
Query: 268 K 270
K
Sbjct: 185 K 185
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 386 VSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPK 499
+++ PT + PS P S KSV+RA+E P K
Sbjct: 194 ITEANPTCEKRKPSRSPSPMLSKKKSVARASENEPSAK 231
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = +2
Query: 422 PSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPRAGPISESSP 586
P ++ +L S + S T Q P+ RPEP+ S CP P P
Sbjct: 117 PLSDSQLDTGDSPATSETTVQDYNPQVQSYCRPEPLSSNHVRSCPPFPPTQHHHP 171
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 28.3 bits (60), Expect = 1.3
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +1
Query: 106 SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKISI 279
S+ L S A K Q+ P K R+R S + GL+P PT S+ RS + S+
Sbjct: 342 SLSPLDHSSAEKEMQKAPAKNKRRRT----GSLETGLYPKESPT-PSKKRSKRVLWSL 394
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 344 SKPGQLWWVSNPRTVSKLRPTIRESIPSAEPKLPR---SGSKSVSRATEQFPEPKSGPV 511
+KPG+ V + K + + + S E K+ R S S+S+S TEQ PK PV
Sbjct: 150 TKPGEPE-VKQETNLQKEKKESKVKLESKEEKISRNLRSSSRSISPVTEQPQSPKIQPV 207
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 383 TVSKLRPTIRESIPSAEPKLPRSGSKSVS 469
TVS P+ E PS+ P LP +GS+S S
Sbjct: 114 TVSIASPSTPELPPSSSPLLPPNGSESSS 142
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 27.1 bits (57), Expect = 3.1
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = +2
Query: 341 NSKPGQLWWVSNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARP 520
+SKP + V +PT S PSA P +S ++ P + A+P
Sbjct: 273 HSKPSETVKSEQETAVEHPKPTATTSAPSASPTGVPVEEESHKATSDAVPPAE----AKP 328
Query: 521 EPVWSEPT*LCPRAGPISESSPI 589
EPV P RA P SES+ +
Sbjct: 329 EPV---PASAAERA-PTSESTTV 347
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +1
Query: 130 KATKTSQRKPIKLNRKRKCKEISSTQHGL---HPPTKPTRVSRNRSSKAKISI 279
+ TKT R+ K+ R+RK + +++ P KP SR K ++
Sbjct: 532 RVTKTQSRRETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERKKVNYAL 584
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 603 QNQLQVQTGQYGHNTGQ-NYQTSQFNGQSYQPGQFSGQNTQFIGSGSGLGSAQVPFQGYL 779
+ +LQ+Q G+Y + Q NY F G Q + G T F G + + +PF G+
Sbjct: 135 KTRLQLQ-GRYNNPHFQSNYNYPSFRGAVKQIAKQEGMKTFFYGYRATI-LRDIPFSGFQ 192
Query: 780 MV 785
++
Sbjct: 193 LL 194
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 537 SLHTGSGLATGPDFGSGNCSVALETDFE 454
S+H+ G D G+GN + LETD E
Sbjct: 15 SVHSREVSVNGSDSGTGNDAYKLETDDE 42
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 157 PIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKISITIML 291
P +LNR R KE + LH +R + +SS SI++ L
Sbjct: 113 PKRLNRSRSSKEDMYRRRSLHGLPSLSRRNSKKSSTLSRSISLHL 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,195
Number of Sequences: 5004
Number of extensions: 63465
Number of successful extensions: 216
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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