Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6260
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   1.5  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   2.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   3.4  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    23   7.9  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -2

Query: 255 YLMSSIKISQIFWI 214
           YLMS+IKIS+I W+
Sbjct: 389 YLMSNIKISEIEWL 402


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 127 RTPRPIRRVQHAHLPR 174
           RT RP+ +++ AHLP+
Sbjct: 283 RTKRPVMKIKDAHLPQ 298


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 95  TEADSTPRSPLERRAPSAACSTPIS 169
           T A STP S +     ++A STP+S
Sbjct: 434 TSASSTPLSSVNSTTATSASSTPLS 458



 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 95  TEADSTPRSPLERRAPSAACSTPIS 169
           T A STP + +     ++A STP+S
Sbjct: 301 TSASSTPLTSVNSTTTTSASSTPLS 325



 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 95  TEADSTPRSPLERRAPSAACSTPIS 169
           T A STP S +     ++A STP++
Sbjct: 450 TSASSTPLSSVNSTTATSASSTPLT 474


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 92  NTEADSTPRSPLERRAPSAACSTPISRE*RT*KYSVIFYSNIQNI 226
           N E +  P SP  + A     S+P S++ +  +  +I Y+N ++I
Sbjct: 189 NYEENREPMSPSPQEALPLMPSSPPSQDYQNDQNHLILYTNSESI 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 802,802
Number of Sequences: 5004
Number of extensions: 11045
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)