Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6260
         (310 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   0.48 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   0.64 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   1.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   4.5  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 0.48
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
 Frame = -2

Query: 267 GDFXYLMSSIKISQIFWIFE*KITEYFYVR------YSREMGVLH 151
           GD+ ++  SI  +Q+F     K+  YF+ +      +   MGVLH
Sbjct: 452 GDYFFICPSIHFAQLFADRGMKVYYYFFTQRTSTNLWGEWMGVLH 496


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 0.64
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 95  TEADSTPRSPLERRAPSAACSTPISRE 175
           TE    P S     AP++ CS+P S +
Sbjct: 586 TEKPDKPASSSASSAPTSVCSSPRSED 612


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 267 GDFXYLMSSIKISQIFWIFE*KITEYFYVR 178
           GD+ ++  SI  +Q+F     K+  YF+ +
Sbjct: 452 GDYFFICPSIHFAQLFADRGMKVYYYFFTQ 481


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 139 PIRRVQHAHLPRITHI 186
           P+R V+ A LP+ T I
Sbjct: 197 PVRGVEEAELPQFTII 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,457
Number of Sequences: 438
Number of extensions: 732
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)