Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6257
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    27   3.4  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    25   7.9  

>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 51  HVMPKLFWIVFISYLVEPCSS 113
           HVMPK  W++ IS   +P SS
Sbjct: 258 HVMPKEAWLIDISMSSQPISS 278


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 523 NSLHRWQVHYTLDGSPLKRL 582
           NS+  W V YTLD SP + L
Sbjct: 321 NSVDTWNVIYTLDKSPERLL 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,763
Number of Sequences: 5004
Number of extensions: 63517
Number of successful extensions: 148
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)