Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6257
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877     31   0.88 
10_08_0074 - 14668625-14669797                                         30   2.0  
12_02_0545 - 20234342-20234353,20234445-20234555,20234980-202350...    28   6.2  
09_06_0050 + 20493063-20493137,20493253-20493347,20493450-204935...    28   6.2  
08_02_1564 + 27892707-27892760,27892875-27892946,27893049-278931...    28   8.2  
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085...    28   8.2  

>05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877
          Length = 446

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = +3

Query: 387 ESKNTLTGPNGLWGRSIVLETAERDRII--CASILST--EKLYETHALAKFTAPVAGTLH 554
           E ++  TG N  WG    +    R R +     IL    E L E H +    A +AGT+ 
Sbjct: 108 EPRDFATGANA-WGNPEDVAARVRWRYVRGLQVILQRQLEALVERHRVGSLAASLAGTIW 166

Query: 555 FRWISAKEI 581
            RW++A ++
Sbjct: 167 LRWVAASKV 175


>10_08_0074 - 14668625-14669797
          Length = 390

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
 Frame = +3

Query: 432 SIVLETAERDRIICASILS-TEKLYETHALAKFTAPVAGTLHFR--WISAKEIDESDSYI 602
           +IV +TA    +   +  S T  ++ T +  K  A   G   +R  +      +E   YI
Sbjct: 28  AIVADTASGYHLFKINDYSRTRDIFPTGSALKSRAFTIGGHQWRIHYYPNGNTEECGEYI 87

Query: 603 QADLYHAKAVTDKSEYTEHKWKLFVTDIFDSD 698
              L+  + VTDK+ Y +H ++LF     D+D
Sbjct: 88  SLFLHLDEIVTDKNVYAQHGFRLFDEFAGDND 119


>12_02_0545 -
           20234342-20234353,20234445-20234555,20234980-20235016,
           20235311-20235447
          Length = 98

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 276 DNRQETRE*SISKLRQDIVMLVLGLCGY*LRCRF--CGKILSLH 151
           D+++     +  KLR D+ +L+  LC +   CRF  CG  +++H
Sbjct: 14  DDQEAEEAATAKKLRWDLHLLLTELCHHAHHCRFITCGDEVNIH 57


>09_06_0050 +
           20493063-20493137,20493253-20493347,20493450-20493547,
           20493684-20493842,20493944-20494055,20494185-20494728,
           20494818-20494915,20494990-20495229,20495312-20495426,
           20495528-20495732,20495805-20496373
          Length = 769

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = +3

Query: 57  MPKLFWIVFISYLVEPCSSFVLRAYL-----SQHGLHGEI 161
           M  L +IVF+  L+EPCSS     Y+       HGL  E+
Sbjct: 3   MSPLLFIVFLLMLLEPCSSSRSNVYIVYMGERHHGLRPEL 42


>08_02_1564 +
           27892707-27892760,27892875-27892946,27893049-27893100,
           27893225-27893305,27893768-27893886,27894102-27894321,
           27894475-27894593,27894683-27894808,27894993-27895133,
           27895240-27895563
          Length = 435

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 413 RASQSIFAFELGVVFPRYNQIPQFFSQIYDFS 318
           +A ++I A E G   P Y+ +P F+S+ +D S
Sbjct: 325 QAVKAIKAKEAGESVPEYDYLPYFYSRSFDLS 356


>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
            22709162-22709206,22709367-22709445,22709522-22709595,
            22709703-22709809,22711116-22711301,22711882-22711920,
            22712020-22712086,22712207-22712281,22713113-22713347,
            22713425-22713755,22714530-22714710,22714810-22714950,
            22715041-22715302,22715503-22715892,22717179-22717735,
            22718421-22718557,22718672-22718853,22718959-22719339,
            22719420-22719545,22719635-22719700,22720056-22721839,
            22721914-22722193,22722386-22722616,22723067-22723588,
            22723683-22723815,22723937-22724193
          Length = 2405

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 641  LICNCFSMIQVSL--DIRIGFVNLFSGDPSKV 552
            ++ NCFSMI  +L  ++ + + NLF G   KV
Sbjct: 2279 IVFNCFSMISSALGAEVSLSYANLFLGPLYKV 2310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,234,646
Number of Sequences: 37544
Number of extensions: 376338
Number of successful extensions: 962
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)