Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6257
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical...    29   2.4  
AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gam...    29   2.4  
Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81017-13|CAB02674.2|  526|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z73971-4|CAA98254.1|  205|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z68005-5|CAA91993.2|  526|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z83122-2|CAB05599.1|  155|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF038623-5|AAO91700.1|  531|Caenorhabditis elegans Hypothetical ...    28   7.4  

>AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15a protein.
          Length = 1107

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 152 WRDRIFPQKRHLNQYPHKPKTNITIS*RSL 241
           WRD +FP  RH ++   K  +N++++ RSL
Sbjct: 85  WRDLLFPNSRHSSR-KDKENSNVSVATRSL 113


>AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gamma
           1B protein.
          Length = 1107

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 152 WRDRIFPQKRHLNQYPHKPKTNITIS*RSL 241
           WRD +FP  RH ++   K  +N++++ RSL
Sbjct: 85  WRDLLFPNSRHSSR-KDKENSNVSVATRSL 113


>Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical
           protein F56A8.1 protein.
          Length = 1049

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 541 QVHYTLDGSPLKRLTNPIRISKLTCIMLKQLQI 639
           Q H+TL  +P  RLT    +S++ C  LK  Q+
Sbjct: 58  QTHFTLISTPFHRLTREAEMSQM-CFPLKDCQV 89


>Z81017-13|CAB02674.2|  526|Caenorhabditis elegans Hypothetical
           protein F59F3.4 protein.
          Length = 526

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
 Frame = +2

Query: 53  CHAKVILDSFYKLFS*TMQFFCSSRLPLPTRPSWRDRI-FPQKRHLNQ-----YPHKPKT 214
           C    +++ F  LF    +  CS  +P P    + D+I F    H N+     +  +   
Sbjct: 326 CSCVTLMEMFVFLFKLVAKSACSQEVPEPDDSFYNDKIEFEYSDHRNKRRYAIFDRETME 385

Query: 215 NITIS*RSLEMDYSRVSCRLSGYF*VPVLRRNFRERNHRFD*RIGVFD 358
              IS  S+++    +  RLS +      +    + N  FD +I +FD
Sbjct: 386 KYLISNNSIDVKSINLDKRLSVFSVKKAPKLRALKDNRNFD-KIDIFD 432


>Z73971-4|CAA98254.1|  205|Caenorhabditis elegans Hypothetical
           protein C50H2.6 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 17  NVIKSFKNVSKSCHAKVILDSFYKLFS*TMQF 112
           N +KS KN S + HAK++L    + F  TM+F
Sbjct: 110 NAVKSCKNKSTTLHAKILLSKEVR-FQLTMKF 140


>Z68005-5|CAA91993.2|  526|Caenorhabditis elegans Hypothetical
           protein F59F3.4 protein.
          Length = 526

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
 Frame = +2

Query: 53  CHAKVILDSFYKLFS*TMQFFCSSRLPLPTRPSWRDRI-FPQKRHLNQ-----YPHKPKT 214
           C    +++ F  LF    +  CS  +P P    + D+I F    H N+     +  +   
Sbjct: 326 CSCVTLMEMFVFLFKLVAKSACSQEVPEPDDSFYNDKIEFEYSDHRNKRRYAIFDRETME 385

Query: 215 NITIS*RSLEMDYSRVSCRLSGYF*VPVLRRNFRERNHRFD*RIGVFD 358
              IS  S+++    +  RLS +      +    + N  FD +I +FD
Sbjct: 386 KYLISNNSIDVKSINLDKRLSVFSVKKAPKLRALKDNRNFD-KIDIFD 432


>Z83122-2|CAB05599.1|  155|Caenorhabditis elegans Hypothetical
           protein R11A5.3 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 418 PLGPVKVFLLSNSAWSFPGIIKYPNSSVKSMISLP-KVSSEHR 293
           P+ PVK   +S+   +  GIIK P    K  +S P K   EHR
Sbjct: 4   PMTPVKRPTISHGIQASDGIIKRPIEGNKKRLSAPIKDKPEHR 46


>AF038623-5|AAO91700.1|  531|Caenorhabditis elegans Hypothetical
           protein T08B6.9 protein.
          Length = 531

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +3

Query: 72  WIVFISYLVEPCSSFVLRAYLSQHGLHGEIEFSHKNDTLISIRT---NLKPTLQYPDGVW 242
           +++ ++  VEP   +    +L     +GE      N   +  +    NL+ ++   D ++
Sbjct: 379 FLLSLNSQVEPVKWYSSMEFLRYFTKYGEFTSETCNTGEVVTKDDLKNLETSMFSSDALY 438

Query: 243 RWTIHEFPVDYRDI 284
             TIH++ +DY DI
Sbjct: 439 NITIHKYKIDYTDI 452


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,130,368
Number of Sequences: 27780
Number of extensions: 346542
Number of successful extensions: 784
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)