Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6254
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synapti... 31 0.90
U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synapti... 31 0.90
AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform... 31 0.90
AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform... 31 0.90
AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isofo... 31 0.90
AC024824-2|AAK85502.1| 740|Caenorhabditis elegans Hypothetical ... 31 0.90
AC006712-8|AAU20838.1| 450|Caenorhabditis elegans Hypothetical ... 29 3.6
U88175-3|AAB42280.1| 295|Caenorhabditis elegans Hypothetical pr... 28 8.4
AF068713-3|AAC17793.1| 286|Caenorhabditis elegans Serpentine re... 28 8.4
>U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform c protein.
Length = 1211
Score = 31.1 bits (67), Expect = 0.90
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 169 QTNVFCMYISWSVIMIYRSERITLINVAQCAIIYT 273
Q C+ S+ +I I S + L++ QCA+IY+
Sbjct: 571 QITTICLNSSYGIIAIGTSSGLALVDTTQCALIYS 605
>U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform a protein.
Length = 1124
Score = 31.1 bits (67), Expect = 0.90
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 169 QTNVFCMYISWSVIMIYRSERITLINVAQCAIIYT 273
Q C+ S+ +I I S + L++ QCA+IY+
Sbjct: 606 QITTICLNSSYGIIAIGTSSGLALVDTTQCALIYS 640
>AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform E
protein.
Length = 1133
Score = 31.1 bits (67), Expect = 0.90
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 169 QTNVFCMYISWSVIMIYRSERITLINVAQCAIIYT 273
Q C+ S+ +I I S + L++ QCA+IY+
Sbjct: 606 QITTICLNSSYGIIAIGTSSGLALVDTTQCALIYS 640
>AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform D
protein.
Length = 1128
Score = 31.1 bits (67), Expect = 0.90
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 169 QTNVFCMYISWSVIMIYRSERITLINVAQCAIIYT 273
Q C+ S+ +I I S + L++ QCA+IY+
Sbjct: 606 QITTICLNSSYGIIAIGTSSGLALVDTTQCALIYS 640
>AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isoform
A protein.
Length = 1124
Score = 31.1 bits (67), Expect = 0.90
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 169 QTNVFCMYISWSVIMIYRSERITLINVAQCAIIYT 273
Q C+ S+ +I I S + L++ QCA+IY+
Sbjct: 606 QITTICLNSSYGIIAIGTSSGLALVDTTQCALIYS 640
>AC024824-2|AAK85502.1| 740|Caenorhabditis elegans Hypothetical
protein Y55B1BR.2 protein.
Length = 740
Score = 31.1 bits (67), Expect = 0.90
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -2
Query: 303 KNNKTPKTLRRINYSTLRDID*SYPLRPVNHNDTPRNIHAKHIRL-TRKKVAYSKSGHYS 127
++ + KT+ R++ +R++ S +RPV+ ++H++H+ + T K V G
Sbjct: 523 RSEQAIKTMSRLD---MREVSESIDIRPVSRASDSSSVHSQHLTVPTNKAVTSVAHGTPK 579
Query: 126 PEERGGGIP 100
P G P
Sbjct: 580 PSPSAGSTP 588
>AC006712-8|AAU20838.1| 450|Caenorhabditis elegans Hypothetical
protein Y119C1B.3 protein.
Length = 450
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Frame = -2
Query: 261 STLRDID*SYPLRPVNHNDTPRNIHAKHIRLTRKKVAYSK----SGHYSPEERGGG-IPK 97
S DID YP P +H+ T + K + +K+ SK + H + G PK
Sbjct: 340 SRTNDIDDDYPSSPYSHHKTHNKHYEKMSKKEKKREKKSKKAAAANHKNASRNNGNETPK 399
Query: 96 KFTYLRTKRELRTPE 52
K + RTP+
Sbjct: 400 KTRRSSSTTPTRTPK 414
>U88175-3|AAB42280.1| 295|Caenorhabditis elegans Hypothetical
protein F21F3.3 protein.
Length = 295
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 106 PPPSFLGGIVATFTVCDFFACQTNVFCMYISWSVI 210
PPP+F G IV T D F +T +F S++VI
Sbjct: 7 PPPTFFGRIVFHLTSDDVF--RTAIFAFIASFTVI 39
>AF068713-3|AAC17793.1| 286|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 66 protein.
Length = 286
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 147 CMRLFCVSDECVLHVYFLECHY--DLPVGEDNFNQCRAVCYNLYVSASWVFYYF 302
C+ F +SD VL Y C Y D+P+ DNFN C+ Y S YF
Sbjct: 131 CVITFGLSDHIVLFEY---CKYTVDVPLACDNFNCVINQCFFNYWSLRDQVQYF 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,588,498
Number of Sequences: 27780
Number of extensions: 453560
Number of successful extensions: 1042
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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