Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6254
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   7.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   7.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   7.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.5  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 641 GKHVYPTSSSVGQLNSNPHF 582
           GK+  PT   + Q  S+PHF
Sbjct: 612 GKYEEPTVGEISQDGSSPHF 631


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 15  RCPINSTFTPQGIRACEVPALY 80
           RC +N+   P  +R CE+  L+
Sbjct: 155 RCAVNNYNDPSNVRNCELVGLH 176


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 705 GALQIVLPRFILCGNRHTVS 764
           GA  I LP  ++ GN HT S
Sbjct: 168 GAACISLPPLLIMGNEHTYS 187


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 713 ANCPSPLYP 739
           AN PSPLYP
Sbjct: 254 ANLPSPLYP 262


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 721 TICNAPRSNVKPYQSLPSSKTI 656
           ++C++PRS  K  + +P  K +
Sbjct: 603 SVCSSPRSEDKEVEDMPVLKRV 624


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 9   TARCPINSTFTPQGIRACEV 68
           TA CP+N  + P   + C +
Sbjct: 135 TASCPMNLQYFPMDRQLCHI 154


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 9   TARCPINSTFTPQGIRACEV 68
           TA CP+N  + P   + C +
Sbjct: 135 TASCPMNLQYFPMDRQLCHI 154


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 9   TARCPINSTFTPQGIRACEV 68
           TA CP+N  + P   + C +
Sbjct: 74  TASCPMNLQYFPMDRQLCHI 93


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 610 LANLIPTLIFECKFGM 563
           +AN++P L+  C FG+
Sbjct: 1   MANVVPWLLSICLFGL 16


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 267 NYSTLRDID*SYPLRPVNHNDTPRNI 190
           N   LRD+  +YP  PV    +  NI
Sbjct: 166 NLEELRDLKETYPFNPVLFISSLENI 191


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 267 NYSTLRDID*SYPLRPVNHNDTPRNI 190
           N   LRD+  +YP  PV    +  NI
Sbjct: 204 NLEELRDLKETYPFNPVLFISSLENI 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,392
Number of Sequences: 438
Number of extensions: 5457
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)