Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6253
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0129 + 13987100-13987572,13988128-13988321,13988474-13989051     29   4.0  
08_02_0462 + 17444726-17445135,17445271-17445546,17446523-17448461     28   9.3  

>07_03_0129 + 13987100-13987572,13988128-13988321,13988474-13989051
          Length = 414

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 706 KKCNEHWVSKNIHSNILSGVRVHVTLDMCTKILEYFGL 593
           KKC + W+S N+  N+    ++   + + TKIL  FGL
Sbjct: 370 KKCIQPWISVNLAKNLKYSGQIGCFISI-TKILPQFGL 406


>08_02_0462 + 17444726-17445135,17445271-17445546,17446523-17448461
          Length = 874

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 700 CNEHWVSKNIHSNILS-GVRVHVTLDMCTKILEYFGLRRHYDHSRLVQIQKLSYDVD 533
           CNE+ +SK +H  I +    +        K+ E        DH+ ++ +++LSYD++
Sbjct: 25  CNEYMISKEVHKEIETLSSELTAIHSFLLKMSEEENPDAQ-DHAWMMDVRELSYDIE 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,140,446
Number of Sequences: 37544
Number of extensions: 393360
Number of successful extensions: 786
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)