Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6249
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces pom...    29   0.68 
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    27   2.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.4  
SPBC17D11.03c |||conserved fungal protein|Schizosaccharomyces po...    26   6.4  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    25   8.4  

>SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 287

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
 Frame = -1

Query: 701 FRVSGGIYFKMSMGSNNRFTTR-WAVSSSTHLSNKK--VASLYTNIQGVLSFWAHRLIYL 531
           F+V  G YF  S G+ N  TT+ + V S THL+  +  V+   T  +G+ +   +  +  
Sbjct: 15  FQVVLGDYFSSSSGNPNLRTTKVYTVVSGTHLATAESTVSKTITTTKGLPTNAYYNCVPS 74

Query: 530 NYI-SLLPMQ*TDQ-VKWAVG 474
            YI S +PM   +Q  +W  G
Sbjct: 75  KYIQSDIPMCAPNQGDRWVKG 95


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 63  KLSVSNSRVF*QLVSCQISARFS-HRRIFGQCFEVLFFVLCNHVVYN 200
           K SV+   +  +++   IS   S + ++FG+   V FF+LC H+V N
Sbjct: 6   KFSVTKRLLILEVLFSAISFGISIYIKVFGRSSIVTFFLLCFHLVPN 52


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 298 RGTGCCYWRPSW 263
           +G GC +W PSW
Sbjct: 646 KGPGCGFWAPSW 657


>SPBC17D11.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 213

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 586 STRIYRVSYLFGHIDLFILTIYLCCPCNEPTKLSG 482
           +T + R + L     L+I+++     CN P K+SG
Sbjct: 4   NTMLQRFNGLLEPTHLYIVSVVAYSACNRPDKISG 38


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 423 SPLLPVCGEPGTLMQTSANCPLNLV 497
           S + P+C   GT++ T+ + PL++V
Sbjct: 173 SVIAPICSALGTVVATTISTPLDIV 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,597
Number of Sequences: 5004
Number of extensions: 63229
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)