Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6249
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0529 + 24687027-24687064,24687150-24687610,24687709-246881...    28   8.8  
05_05_0040 + 21789322-21789734,21790429-21790459,21790730-217908...    28   8.8  
01_05_0404 - 21833736-21834035,21834506-21834662,21834834-218350...    28   8.8  

>11_06_0529 +
           24687027-24687064,24687150-24687610,24687709-24688124,
           24688688-24688860,24689733-24689868,24689914-24690264,
           24691170-24691344,24691761-24691822
          Length = 603

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 295 HGTTTQGYGARGYTPPSVTSNGNYKVKTKV 384
           H   T   G  GY PP  TS+G +  KT V
Sbjct: 352 HHQVTTFEGTFGYLPPEYTSHGIFNEKTDV 381


>05_05_0040 +
           21789322-21789734,21790429-21790459,21790730-21790815,
           21791000-21791012
          Length = 180

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 301 CRGT-GCCYWRPSWWQLCTLSCSFGTC 224
           CRG  G   WRP WW+    S + G C
Sbjct: 52  CRGGFGGADWRPWWWREYAWSAAGGRC 78


>01_05_0404 -
           21833736-21834035,21834506-21834662,21834834-21835080,
           21835424-21835637,21836565-21836728,21836843-21836950,
           21841596-21841797,21843676-21844194
          Length = 636

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 289 LYHGTTTQGYGARGYTPPSVTSNGNYKVKTKVKTL 393
           L    TT+G G+ GY  P V   G +  K+ V +L
Sbjct: 473 LMESATTKGCGSFGYIAPEVLLTGTFSDKSDVYSL 507


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,312,143
Number of Sequences: 37544
Number of extensions: 456434
Number of successful extensions: 1089
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)