Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6249
         (731 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119569-1|AAM50223.1|  131|Drosophila melanogaster HL07933p pro...    29   6.5  
AF154418-1|AAD38397.1|  131|Drosophila melanogaster anoxia upreg...    29   6.5  
AE014297-1193|AAF54551.1|  131|Drosophila melanogaster CG6544-PC...    29   6.5  

>AY119569-1|AAM50223.1|  131|Drosophila melanogaster HL07933p
           protein.
          Length = 131

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 301 TTTQGYGARGYTPPSVTSNGNYKVKTKVKTLSYH 402
           T+T G G  GY+  S TS GN    TK +  SYH
Sbjct: 98  TSTTGAGPGGYSYSSTTS-GNLPGGTKYRHFSYH 130


>AF154418-1|AAD38397.1|  131|Drosophila melanogaster anoxia
           upregulated protein protein.
          Length = 131

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 301 TTTQGYGARGYTPPSVTSNGNYKVKTKVKTLSYH 402
           T+T G G  GY+  S TS GN    TK +  SYH
Sbjct: 98  TSTTGAGPGGYSYSSTTS-GNLPGGTKYRHFSYH 130


>AE014297-1193|AAF54551.1|  131|Drosophila melanogaster CG6544-PC,
           isoform C protein.
          Length = 131

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 301 TTTQGYGARGYTPPSVTSNGNYKVKTKVKTLSYH 402
           T+T G G  GY+  S TS GN    TK +  SYH
Sbjct: 98  TSTTGAGPGGYSYSSTTS-GNLPGGTKYRHFSYH 130


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,010,240
Number of Sequences: 53049
Number of extensions: 753473
Number of successful extensions: 2104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2104
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3293648160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)