Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6249
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    29   2.6  
U49829-5|AAK68351.1|  564|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cycl...    29   4.5  
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U88172-6|AAB42261.1|  310|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF016451-11|AAB65999.1|  327|Caenorhabditis elegans Hypothetical...    28   5.9  
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    28   7.8  

>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/65 (20%), Positives = 27/65 (41%)
 Frame = +1

Query: 304  TTQGYGARGYTPPSVTSNGNYKVKTKVKTLSYHSCQSGSGHHFSRSVVSLVHSCKHPPTA 483
            TT  + +  + PP +  N +Y           H   S + HH+S +     ++ + P   
Sbjct: 1290 TTSNFPSHNFPPPDLMRNSHYNQNMSTS----HQSSSSNNHHYSHNYSYPHYNIQLPQNQ 1345

Query: 484  HLTWS 498
            + +W+
Sbjct: 1346 YQSWT 1350


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 301  CRGTGCCYWRPSWWQLCTLSCSFG 230
            C    C  W+PS W  C+++C  G
Sbjct: 1291 CHLLPCTSWKPSHWSPCSVTCGSG 1314



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 301  CRGTGCCYWRPSWWQLCTLSCSFG 230
            C    C +WR + W  C++SC  G
Sbjct: 1236 CNLGTCPFWRNTDWSACSVSCGIG 1259



 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -2

Query: 316  TPVWWCRGTGCCY-WRPSWWQLCTLSCSFG 230
            T +  C  + C Y W P  WQ C+ SC  G
Sbjct: 1799 TSIRECDTSNCPYEWVPGDWQTCSKSCGEG 1828


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 301  CRGTGCCYWRPSWWQLCTLSCSFG 230
            C    C  W+PS W  C+++C  G
Sbjct: 1291 CHLLPCTSWKPSHWSPCSVTCGSG 1314



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 301  CRGTGCCYWRPSWWQLCTLSCSFG 230
            C    C +WR + W  C++SC  G
Sbjct: 1236 CNLGTCPFWRNTDWSACSVSCGIG 1259



 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -2

Query: 316  TPVWWCRGTGCCY-WRPSWWQLCTLSCSFG 230
            T +  C  + C Y W P  WQ C+ SC  G
Sbjct: 1799 TSIRECDTSNCPYEWVPGDWQTCSKSCGEG 1828


>U49829-5|AAK68351.1|  564|Caenorhabditis elegans Hypothetical
           protein F27D9.7 protein.
          Length = 564

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = -2

Query: 547 IDLFILTIYLCCPCNEPTKL 488
           I LFI TIY CCP NEPT++
Sbjct: 240 ISLFICTIY-CCP-NEPTEI 257


>AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cyclase
           protein 17 protein.
          Length = 1146

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 92  LTTR*LSDFRAIFAPAYFRPVF*SF--IFCFVQS 187
           LTTR   DFRA   PA   P F  F    CFV++
Sbjct: 588 LTTRGRRDFRACLKPARLTPAFRLFSTFLCFVEA 621


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
           protein F53B6.2a protein.
          Length = 1045

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 301 CRGTGCCYWRPSWWQLCTLSCSFG 230
           C  T C  W    W  CT SC  G
Sbjct: 290 CVSTSCGRWEAGKWSKCTASCGQG 313


>U88172-6|AAB42261.1|  310|Caenorhabditis elegans Hypothetical
           protein ZK354.9 protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 462 MQTSANCPLNLVGSLHGQQRYIVKI-NKSMCPKR*DTLYI 578
           M   AN P+N+ G +HGQ   ++++ +K+  P R + L++
Sbjct: 35  MLIEANSPINICGDIHGQFSDLLRLFDKNGFPHRANYLFL 74


>AF016451-11|AAB65999.1|  327|Caenorhabditis elegans Hypothetical
           protein C03A7.2 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
 Frame = -2

Query: 310 VWWCRGTGC--CY-WRPSWWQLCTLSCSFGTCCIFYSEP 203
           V W RG G   CY +R SW       C  G  C+    P
Sbjct: 247 VRWARGQGTERCYEYRASWMDYFPFQCLLGCACVSSRTP 285


>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
           protein C36B7.5b protein.
          Length = 1148

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -2

Query: 322 PRTPVWWCRGTGCCYWRPSW--WQLCTLSCSFGTC 224
           P   + +C+   C YW   W  W  C++SC  G C
Sbjct: 581 PGEEMRFCQIASCPYWG-DWTPWSGCSVSCGQGVC 614


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
           protein C36B7.5a protein.
          Length = 1121

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -2

Query: 322 PRTPVWWCRGTGCCYWRPSW--WQLCTLSCSFGTC 224
           P   + +C+   C YW   W  W  C++SC  G C
Sbjct: 581 PGEEMRFCQIASCPYWG-DWTPWSGCSVSCGQGVC 614


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/39 (30%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
 Frame = -2

Query: 340 AACTPSPRTPVWWCRGTGCCYWRPSW--WQLCTLSCSFG 230
           A     P      C G  CC W   W  W +C   C  G
Sbjct: 686 ATTCQGPSIETTLCEGQSCCNW-SEWCHWSMCDKECGGG 723


>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +3

Query: 438 VCGEPGTLMQTSANCPLNLVGSLHGQQRYIVKINKSMCPKR*DTLYIRVERCDFFIA*VG 617
           VC     L+  ++ C  +  GS+ G    I  +    C  + + +  R ++C      +G
Sbjct: 783 VCPIAAALLNKTSECNCDATGSVSG----ICNVQGGQCECKPNVVGRRCDQCA-----IG 833

Query: 618 RRAYGPSGCE 647
              +GPSGC+
Sbjct: 834 TYGFGPSGCK 843


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,759,270
Number of Sequences: 27780
Number of extensions: 383038
Number of successful extensions: 1023
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)