Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6249
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   2.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.2  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    22   6.8  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   9.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.0  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 228 VPKLQDNVHSCHHEG 272
           + ++ ++VH CHH G
Sbjct: 15  IQQILESVHHCHHNG 29


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = -2

Query: 358 HWR*HLAACTPSPR-TP 311
           HW+    AC+P PR TP
Sbjct: 384 HWQMSCVACSPPPRQTP 400


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = -2

Query: 487 SGQLADVCMSVPGSPQTGRSGDHYRSDKSDTTMSLP*SLPYN 362
           S Q  D C   P   + G  G HY +  S   M  P   PYN
Sbjct: 45  SQQAGDPCD--PSLLRQGVPGHHYGAAGSQQDMPYPRFPPYN 84


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 710 SNAFRVSGGIYFKMSMGSNNRFTTRWAVS 624
           SN F +  G YF   +G+N  ++  + VS
Sbjct: 35  SNLFWLFVGTYFPSLIGANEHYSKFFPVS 63


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 435 PVCGEPGTLMQTSANCP 485
           P+CG  G +  T   CP
Sbjct: 76  PICGACGDIAHTVKYCP 92


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 292 YHGTTTQGYGARGYTPPSVTSNGNYKVK 375
           YH       G +G+   S+T N  Y+ K
Sbjct: 197 YHYNALTCEGCKGFFRRSITKNAVYQCK 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,771
Number of Sequences: 438
Number of extensions: 4811
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)