Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6248
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016420-3|AAB65310.1|  291|Caenorhabditis elegans Serpentine re...    31   0.73 
Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U50197-3|AAA91256.2|  327|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AC024831-12|AAW57824.1|  356|Caenorhabditis elegans Serpentine r...    27   9.1  

>AF016420-3|AAB65310.1|  291|Caenorhabditis elegans Serpentine
           receptor, class sx protein13 protein.
          Length = 291

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 389 KLRFHKHSILLFIFIYVHQLRLTIQLQLVLYTNNLIILKYKFQYISIKS 243
           KL   +    ++I  YV+       L L++  + LI++K+  QY++I S
Sbjct: 70  KLNIKRRECFMYISFYVYSQAAQGVLMLIIMLDLLILIKFPLQYMNIAS 118


>Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical
           protein C14A4.3 protein.
          Length = 603

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 351 FYICTSITTHNSITTCTIYKQFN 283
           FY+      HN +TTCT+Y++ N
Sbjct: 580 FYVPFLSAKHNVMTTCTLYRKSN 602


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 129 VVLDVSPRTAMCVRNVDVQMCPAVHTMTRSTRRCSTARDAKC 4
           + +  SP+T+ CV     Q      T T ++++C+ A    C
Sbjct: 249 IYVQASPQTSQCVPQCQQQCQQQCQTRTTASQQCAPACSTSC 290


>U50197-3|AAA91256.2|  327|Caenorhabditis elegans Hypothetical
           protein F25E2.3 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 548 TVLDCFAGLSVHLMYLEVEFCTSPIYYQVYRFR 646
           TV DCF   S+H  +++      PI Y + R R
Sbjct: 78  TVEDCFIPHSLHSYFIKTGSVDKPILYMIDRIR 110


>AC024831-12|AAW57824.1|  356|Caenorhabditis elegans Serpentine
           receptor, class t protein23 protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 125 SWMCLHGPQCAFEMSMFKCVLQFTL*RAVPGVVQQPA 15
           +W C HG  C   ++M K V +  +   VP +++  A
Sbjct: 286 AWQCAHGSVCIVYITMNKTVRRGVIDLLVPRIIRDKA 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,749,345
Number of Sequences: 27780
Number of extensions: 264230
Number of successful extensions: 591
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)